myRT

myRT report for GCA_002850955.1_ASM285095v1

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Seq: NCMJ01000055.1 Klebsiella pneumoniae strain COL-Kpn30 contig_10, whole genome shotgun sequence (1785 bp)
Overview 1 RT 1: 1-1335 bp Neighborhood of RT #1 [1, 1727] RVT-GII Feature: gene Location: 1-243 bp Feature: gene Location: 318-1727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 645-1335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 645-1 335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NCMJ01000267.1 Klebsiella pneumoniae strain COL-Kpn30 contig_114, whole genome shotgun sequence (4796 bp)
Overview 1 RT 1: 692-3842 bp Neighborhood of RT #1 [692, 3844] Psu Psu RVT-UG17 SLATT_5 INT_P4_C Feature: gene Location: 692-874 bp Feature: domain Description: Psu Location: 698-866 bp Feature: domain Description: Psu Location: 698-866 bp Feature: gene Location: 882-1016 bp Feature: domain Description: Psu Location: 888-1008 bp Feature: domain Description: Psu Location: 888-1008 bp Feature: gene Location: 1343-2752 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1580-2192 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1580-2 192 bp Feature: gene Location: 2851-3588 bp Feature: domain Description: SLATT_5 Location: 2950-3553 bp Feature: domain Description: SLATT_5 Location: 2 950-3553 bp Feature: gene Location: 3641-3844 bp Feature: domain Description: INT_P4_C Location: 3656-3842 bp Feature: domain Description: INT_P4_C Location: 3656-3842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), INT_P4_C (cd00801)

Seq: NCMJ01000058.1 Klebsiella pneumoniae strain COL-Kpn30 contig_11_2, whole genome shotgun sequence (18070 bp)
Overview 1 RT 1: 10552-17420 bp Neighborhood of RT #1 [10552, 17422] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 10552-11280 bp Feature: domain Description: FimC Location: 10600-11263 bp Feature: domain Description: FimC Location: 10600-11263 bp Feature: gene Location: 11312-13921 bp Feature: domain Description: FimD Location: 11369-13910 bp Feature: domain Description: FimD Location: 113 69-13 910 bp Feature: gene Location: 13921-15999 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 14329-14773 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 143 29-14773 bp Feature: gene Location: 16056-16496 bp Feature: domain Description: Integrase_1 Location: 16062-16278 bp Feature: domain Description: Integrase_1 Location: 16062-16278 bp Feature: gene Location: 16757-17422 bp Feature: domain Description: INT_P4_C Location: 16862-17420 bp Feature: domain Description: INT_P4_C Location: 16862-17420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: NCMJ01000282.1 Klebsiella pneumoniae strain COL-Kpn30 contig_125, whole genome shotgun sequence (2310 bp)
Overview 1 RT 1: 3-1955 bp Neighborhood of RT #1 [3, 2200] RVT-GII GIIM Feature: gene Location: 3-383 bp Feature: gene Location: 677-2200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1682 bp Feature: domain Description: GIIM Note: maturase Location: 1757-1955 bp Feature: domain Description: GIIM Note: maturase Location: 1757-1955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NCMJ01000233.1 Klebsiella pneumoniae strain COL-Kpn30 contig_95_1, whole genome shotgun sequence (11783 bp)
Overview 1 RT 1: 105-3102 bp Neighborhood of RT #1 [105, 3266] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 105-1070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 213-810 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 213-810 bp Feature: gene Location: 1048-2640 bp Feature: domain Description: COG3950 Location: 1228-2449 bp Feature: domain Description: COG395 0 Location: 1228-2449 bp Feature: gene Location: 2637-3266 bp Feature: domain Description: TIGR02646 Location: 2727-3102 bp Feature: domain Description: TIGR02646 Location: 2727-3102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)