myRT

myRT report for GCA_002851345.1_ASM285134v1

Download annotations/find similar RTs

Seq: NCMW01000037.1 Klebsiella pneumoniae strain COL-Kpn43 contig_23_0, whole genome shotgun sequence (115339 bp)
Overview 1 RT 1: 97327-103779 bp Neighborhood of RT #1 [97327, 103779] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 97327-97632 bp Feature: gene Location: 98515-100791 bp Feature: domain Description: AAA_15 Location: 98548-99556 bp Feature: domain Description: AAA_1 5 Location: 98548-99556 bp Feature: gene Location: 100906-102006 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101086-101620 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 01 086-1 01 620 bp Feature: gene Location: 102662-103498 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 103151-103322 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 031 51 -1 03322 bp Feature: gene Location: 103528-103779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: NCMW01000067.1 Klebsiella pneumoniae strain COL-Kpn43 contig_44, whole genome shotgun sequence (9217 bp)
Overview 1 RT 1: 668-4761 bp Neighborhood of RT #1 [668, 4826] COG3547 RVT-GII GIIM PHA02517 Feature: gene Location: 668-1744 bp Feature: domain Description: COG3547 Location: 707-1628 bp Feature: domain Description: COG3547 Location: 707-162 8 bp Feature: gene Location: 1993-2199 bp Feature: gene Location: 2286-3809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2559-3291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 559-32 91 bp Feature: domain Description: GIIM Note: maturase Location: 3366-3564 bp Feature: domain Description: GIIM Note: maturase Location: 3366-3564 bp Feature: gene Location: 3763-4188 bp Feature: gene Location: 4401-4826 bp Feature: domain Description: PHA02517 Location: 4425-4761 bp Feature: domain Description: PHA02 517 Location: 442 5-4761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NCMW01000008.1 Klebsiella pneumoniae strain COL-Kpn43 contig_4_2, whole genome shotgun sequence (151615 bp)
Overview 1 RT 1: 123032-126106 bp Neighborhood of RT #1 [123032, 126111] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 123032-123250 bp Feature: domain Description: PRK09678 Location: 123035-123233 bp Feature: domain Description: PRK09678 Location: 123 03 5-123 23 3 bp Feature: gene Location: 123497-123685 bp Feature: gene Location: 123654-124427 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 123789-124242 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 123 789-124242 bp Feature: gene Location: 125042-125524 bp Feature: domain Description: SmpB Location: 125072-125516 bp Feature: domain Description: SmpB Location: 125072-125516 bp Feature: gene Location: 125635-126111 bp Feature: domain Description: PRK10724 Location: 125641-126106 bp Feature: domain Description: PRK10724 Location: 125641-126106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)