myRT

myRT report for GCA_002851435.1_ASM285143v1

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Seq: NCMO01000017.1 Klebsiella pneumoniae strain COL-Kpn35 contig_11_1, whole genome shotgun sequence (142071 bp)
Overview 1 RT 1: 134553-141421 bp Neighborhood of RT #1 [134553, 141423] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 134553-135281 bp Feature: domain Description: FimC Location: 134601-135264 bp Feature: domain Description: FimC Location: 1 34601 -1 35264 bp Feature: gene Location: 135313-137922 bp Feature: domain Description: FimD Location: 135370-137911 bp Feature: domain Description: FimD Location: 1 35370-1 3791 1 bp Feature: gene Location: 137922-140000 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 138330-138774 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 38330-1 38774 bp Feature: gene Location: 140057-140497 bp Feature: domain Description: Integrase_1 Location: 140063-140279 bp Feature: domain Description: Integrase_1 Location: 1 40063-1 40279 bp Feature: gene Location: 140758-141423 bp Feature: domain Description: INT_P4_C Location: 140863-141421 bp Feature: domain Description: INT_P4_C Location: 1 40863-1 41 421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: NCMO01000024.1 Klebsiella pneumoniae strain COL-Kpn35 contig_16_1, whole genome shotgun sequence (13181 bp)
Overview 1 RT 1: 408-4844 bp Neighborhood of RT #1 [408, 4852] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 408-785 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: gene Location: 830-1105 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: gene Location: 1257-2744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662-2352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662 -2 352 bp Feature: gene Location: 2769-3581 bp Feature: domain Description: PRK10276 Location: 3201-3564 bp Feature: domain Description: PRK102 76 Location: 32 01-3564 bp Feature: gene Location: 3581-4852 bp Feature: domain Description: umuC Location: 3584-4844 bp Feature: domain Description: umuC Location: 3584-4844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: NCMO01000039.1 Klebsiella pneumoniae strain COL-Kpn35 contig_30, whole genome shotgun sequence (43088 bp)
Overview 1 RT 1: 13986-17256 bp Neighborhood of RT #1 [13986, 17270] RVT-GII PRK10276 Feature: gene Location: 13986-14201 bp Feature: gene Location: 14468-14698 bp Feature: gene Location: 14932-16443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15337-16051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 3 7-16051 bp Feature: gene Location: 16494-16727 bp Feature: gene Location: 16845-17270 bp Feature: domain Description: PRK10276 Location: 16848-17256 bp Feature: domain Description: PRK10276 Location: 16848-17256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)