myRT

myRT report for GCA_002853975.1_ASM285397v1

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Seq: NCPS01000041.1 Klebsiella pneumoniae strain COL-Kpn118 contig_18_2, whole genome shotgun sequence (173305 bp)
Overview 1 RT 1: 134553-141421 bp Neighborhood of RT #1 [134553, 141423] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 134553-135281 bp Feature: domain Description: FimC Location: 134601-135264 bp Feature: domain Description: FimC Location: 1 34601 -1 35264 bp Feature: gene Location: 135313-137922 bp Feature: domain Description: FimD Location: 135370-137911 bp Feature: domain Description: FimD Location: 1 35370-1 3791 1 bp Feature: gene Location: 137922-140000 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 138330-138774 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 38330-1 38774 bp Feature: gene Location: 140057-140497 bp Feature: domain Description: Integrase_1 Location: 140063-140279 bp Feature: domain Description: Integrase_1 Location: 1 40063-1 40279 bp Feature: gene Location: 140758-141423 bp Feature: domain Description: INT_P4_C Location: 140863-141421 bp Feature: domain Description: INT_P4_C Location: 1 40863-1 41 421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: NCPS01000087.1 Klebsiella pneumoniae strain COL-Kpn118 contig_57, whole genome shotgun sequence (13330 bp)
Overview 1 RT 1: 1957-5227 bp Neighborhood of RT #1 [1957, 5241] RVT-GII PRK10276 Feature: gene Location: 1957-2172 bp Feature: gene Location: 2439-2669 bp Feature: gene Location: 2903-4414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3308-4022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3308-402 2 bp Feature: gene Location: 4465-4698 bp Feature: gene Location: 4816-5241 bp Feature: domain Description: PRK10276 Location: 4819-5227 bp Feature: domain Description: PRK102 76 Location: 4819-52 2 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: NCPS01000107.1 Klebsiella pneumoniae strain COL-Kpn118 contig_73, whole genome shotgun sequence (1804 bp)
Overview 1 RT 1: 3-1352 bp Neighborhood of RT #1 [3, 1744] RVT-GII Feature: gene Location: 3-260 bp Feature: gene Location: 335-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-13 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII