myRT

myRT report for GCA_002854015.1_ASM285401v1

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Seq: NCPK01000027.1 Klebsiella pneumoniae strain COL-Kpn110 contig_12_1, whole genome shotgun sequence (142072 bp)
Overview 1 RT 1: 134554-141422 bp Neighborhood of RT #1 [134554, 141424] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 134554-135282 bp Feature: domain Description: FimC Location: 134602-135265 bp Feature: domain Description: FimC Location: 1 34602-1 35265 bp Feature: gene Location: 135314-137923 bp Feature: domain Description: FimD Location: 135371-137912 bp Feature: domain Description: FimD Location: 1 35371 -1 3791 2 bp Feature: gene Location: 137923-140001 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 138331-138775 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 38331 -1 38775 bp Feature: gene Location: 140058-140498 bp Feature: domain Description: Integrase_1 Location: 140064-140280 bp Feature: domain Description: Integrase_1 Location: 1 40064-1 40280 bp Feature: gene Location: 140759-141424 bp Feature: domain Description: INT_P4_C Location: 140864-141422 bp Feature: domain Description: INT_P4_C Location: 1 40864-1 41 422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: NCPK01000066.1 Klebsiella pneumoniae strain COL-Kpn110 contig_40, whole genome shotgun sequence (3145 bp)
Overview 1 RT 1: 408-3143 bp Neighborhood of RT #1 [408, 3143] DDE_Tnp_IS1 InsA RVT-GII Feature: gene Location: 408-785 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: gene Location: 830-1105 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: gene Location: 1257-2744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662-2352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662 -2 352 bp Feature: gene Location: 2898-3143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII

Seq: NCPK01000076.1 Klebsiella pneumoniae strain COL-Kpn110 contig_49_1, whole genome shotgun sequence (22997 bp)
Overview 1 RT 1: 17845-21029 bp Neighborhood of RT #1 [17845, 21029] PRK10276 RVT-GII Feature: gene Location: 17845-18270 bp Feature: domain Description: PRK10276 Location: 17848-18256 bp Feature: domain Description: PRK10276 Location: 17848-18256 bp Feature: gene Location: 18388-18621 bp Feature: gene Location: 18672-20183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19077-19791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19077-19791 bp Feature: gene Location: 20417-20647 bp Feature: gene Location: 20706-21029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII