myRT

myRT report for GCA_002855295.1_ASM285529v1

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Seq: NCNL01000033.1 Klebsiella pneumoniae strain COL-Kpn59 contig_17_1, whole genome shotgun sequence (142072 bp)
Overview 1 RT 1: 649-7502 bp Neighborhood of RT #1 [649, 7519] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 649-1314 bp Feature: domain Description: INT_P4_C Location: 754-1312 bp Feature: domain Description: INT_P4_C Location: 754-1 31 2 bp Feature: gene Location: 1575-2015 bp Feature: domain Description: Integrase_1 Location: 1581-1797 bp Feature: domain Description: Integrase_1 Location: 1 581 -1 797 bp Feature: gene Location: 2072-4150 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2480-2924 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2480-2924 bp Feature: gene Location: 4150-6759 bp Feature: domain Description: FimD Location: 4207-6748 bp Feature: domain Description: FimD Location: 4207-6748 bp Feature: gene Location: 6791-7519 bp Feature: domain Description: FimC Location: 6839-7502 bp Feature: domain Description: FimC Location: 6839-7502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: NCNL01000054.1 Klebsiella pneumoniae strain COL-Kpn59 contig_32, whole genome shotgun sequence (13018 bp)
Overview 1 RT 1: 408-4844 bp Neighborhood of RT #1 [408, 4852] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 408-785 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: gene Location: 830-1105 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: gene Location: 1257-2744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662-2352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662 -2 352 bp Feature: gene Location: 2769-3581 bp Feature: domain Description: PRK10276 Location: 3201-3564 bp Feature: domain Description: PRK102 76 Location: 32 01-3564 bp Feature: gene Location: 3581-4852 bp Feature: domain Description: umuC Location: 3584-4844 bp Feature: domain Description: umuC Location: 3584-4844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: NCNL01000063.1 Klebsiella pneumoniae strain COL-Kpn59 contig_41, whole genome shotgun sequence (34545 bp)
Overview 1 RT 1: 17380-20564 bp Neighborhood of RT #1 [17380, 20564] PRK10276 RVT-GII Feature: gene Location: 17380-17805 bp Feature: domain Description: PRK10276 Location: 17383-17791 bp Feature: domain Description: PRK10276 Location: 173 83 -17791 bp Feature: gene Location: 17923-18156 bp Feature: gene Location: 18207-19718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18612-19326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18612-193 26 bp Feature: gene Location: 19952-20182 bp Feature: gene Location: 20241-20564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII