myRT

myRT report for GCA_002855315.1_ASM285531v1

Download annotations/find similar RTs

Seq: NCNI01000038.1 Klebsiella pneumoniae strain COL-Kpn56 contig_13_1, whole genome shotgun sequence (109039 bp)
Overview 1 RT 1: 16246-22698 bp Neighborhood of RT #1 [16246, 22698] Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 16246-16497 bp Feature: gene Location: 16527-17363 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 17016-17187 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 701 6-1 71 87 bp Feature: gene Location: 18019-19119 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18199-18733 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 81 99-1 8733 bp Feature: gene Location: 19234-21480 bp Feature: domain Description: AAA_15 Location: 19237-20245 bp Feature: domain Description: AAA_1 5 Location: 1 9237-20245 bp Feature: gene Location: 22393-22698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: NCNI01000126.1 Klebsiella pneumoniae strain COL-Kpn56 contig_46, whole genome shotgun sequence (7174 bp)
Overview 1 RT 1: 4070-6694 bp Neighborhood of RT #1 [4070, 6939] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 4070-4372 bp Feature: domain Description: InsE Location: 4079-4361 bp Feature: domain Description: InsE Location: 4079-4361 bp Feature: gene Location: 4399-4824 bp Feature: domain Description: PHA02517 Location: 4423-4759 bp Feature: domain Description: PHA02 517 Location: 442 3-4759 bp Feature: gene Location: 5416-6939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5689-6421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5689-642 1 bp Feature: domain Description: GIIM Note: maturase Location: 6496-6694 bp Feature: domain Description: GIIM Note: maturase Location: 6496-6694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NCNI01000018.1 Klebsiella pneumoniae strain COL-Kpn56 contig_6_3, whole genome shotgun sequence (151613 bp)
Overview 1 RT 1: 123031-126105 bp Neighborhood of RT #1 [123031, 126110] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 123031-123249 bp Feature: domain Description: PRK09678 Location: 123034-123232 bp Feature: domain Description: PRK09678 Location: 123 03 4-123 23 2 bp Feature: gene Location: 123496-123684 bp Feature: gene Location: 123653-124426 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 123788-124241 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 123 788-124241 bp Feature: gene Location: 125041-125523 bp Feature: domain Description: SmpB Location: 125071-125515 bp Feature: domain Description: SmpB Location: 125071-125515 bp Feature: gene Location: 125634-126110 bp Feature: domain Description: PRK10724 Location: 125640-126105 bp Feature: domain Description: PRK10724 Location: 125640-126105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)