myRT

myRT report for GCA_002855465.1_ASM285546v1

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Seq: PJOO01000043.1 Klebsiella variicola strain BD.DM.165 NODE_43_length_16389_cov_20.4502_pilon, whole genome shotgun sequence (16389 bp)
Overview 1 RT 1: 5177-12243 bp Neighborhood of RT #1 [5177, 12284] HsdS RMtype1_S_Eco2747I-TRD2-CR2_like RMtype1_S_Eco2747I-TRD2-CR2_like PRK04247 RVT-UG5 IncA Feature: gene Location: 5177-6853 bp Feature: domain Description: HsdS Location: 5183-5516 bp Feature: domain Description: HsdS Location: 51 83-551 6 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 5750-5969 bp Feature: domain Description: RMtype1 _S_Eco2747I-TRD2-CR2_like Location: 5750-5969 bp Feature: domain Description: RMtype1_S_Eco2747I-TRD2-CR2_like Location: 6269-6830 bp Feature: domain Description: RMtype1 _S_Eco2747I-TRD2-CR2_like Location: 6269-6830 bp Feature: gene Location: 6864-7964 bp Feature: domain Description: PRK04247 Location: 6927-7155 bp Feature: domain Description: PRK04247 Location: 6927-71 55 bp Feature: gene Location: 8144-11161 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8642-9137 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8642-91 37 bp Feature: gene Location: 11352-11537 bp Feature: gene Location: 11574-12284 bp Feature: domain Description: IncA Location: 11901-12243 bp Feature: domain Description: IncA Location: 1 1 901 -1 2243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdS (COG0732), RMtype1_S_Eco2747I-TRD2-CR2_like (cd17247), PRK04247 (endonuclease NucS), RVT-UG5, IncA

Seq: PJOO01000047.1 Klebsiella variicola strain BD.DM.165 NODE_47_length_11300_cov_13.3185_pilon, whole genome shotgun sequence (11300 bp)
Overview 1 RT 1: 2-4271 bp Neighborhood of RT #1 [2, 4276] HTH_23 RVT-Retrons DUF4756 Feature: gene Location: 2-286 bp Feature: domain Description: HTH_23 Location: 83-221 bp Feature: domain Description: HTH_2 3 Location: 83-2 2 1 bp Feature: gene Location: 490-1365 bp Feature: gene Location: 1456-2397 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1624-2173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162 4-2 173 bp Feature: gene Location: 2684-3562 bp Feature: gene Location: 3797-4276 bp Feature: domain Description: DUF4756 Location: 3800-4271 bp Feature: domain Description: DUF4756 Location: 3800-42 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), RVT-Retrons, DUF4756 (pfam15948)

Seq: PJOO01000096.1 Klebsiella variicola strain BD.DM.165 NODE_96_length_1788_cov_27.4738_pilon, whole genome shotgun sequence (1788 bp)
Overview 1 RT 1: 2-1785 bp Neighborhood of RT #1 [2, 1785] RVT-GII Feature: gene Location: 2-145 bp Feature: gene Location: 182-1399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 7-968 bp Feature: gene Location: 1546-1785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII