myRT

myRT report for GCA_002855635.1_ASM285563v1

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Seq: NBSV01000116.1 Escherichia coli strain Ec-HUCA 5 NODE_101_length_14004_cov_16.493216, whole genome shotgun sequence (14096 bp)
Overview 1 RT 1: 7159-11032 bp Neighborhood of RT #1 [7159, 11403] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7159-7335 bp Feature: gene Location: 7743-8447 bp Feature: domain Description: SLATT_5 Location: 7905-8415 bp Feature: domain Description: SLATT_5 Location: 7905-841 5 bp Feature: gene Location: 8425-9795 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8653-9259 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 8653-9259 bp Feature: gene Location: 9908-10492 bp Feature: domain Description: Caudo_TAP Location: 10124-10481 bp Feature: domain Description: Caudo_TAP Location: 1 01 24-1 0481 bp Feature: gene Location: 10501-11403 bp Feature: domain Description: Macro_Appr_pase Location: 10519-11032 bp Feature: domain Description: Macro_Appr_pase Location: 1 051 9-1 1 032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: NBSV01000003.1 Escherichia coli strain Ec-HUCA 5 NODE_32_length_205804_cov_16.606689, whole genome shotgun sequence (205896 bp)
Overview 1 RT 1: 78635-82576 bp 2 RT 2: 101492-104901 bp Neighborhood of RT #1 [78635, 82576] RVT-Retrons Neighborhood of RT #2 [101492, 104966] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 78635-78874 bp Feature: gene Location: 79181-79357 bp Feature: gene Location: 79430-81202 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79589-80207 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79589-802 07 bp Feature: gene Location: 81224-81391 bp Feature: gene Location: 81437-82576 bp Feature: gene Location: 101492-101662 bp Feature: gene Location: 101980-102396 bp Feature: domain Description: PHA02517 Location: 101983-102388 bp Feature: domain Description: PHA02 517 Location: 101983-102 388 bp Feature: gene Location: 102519-104042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102792-103524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 792 -10352 4 bp Feature: domain Description: GIIM Note: maturase Location: 103599-103797 bp Feature: domain Description: GIIM Note: maturase Location: 103599-103797 bp Feature: gene Location: 103996-104421 bp Feature: gene Location: 104634-104966 bp Feature: domain Description: PHA02517 Location: 104649-104901 bp Feature: domain Description: PHA02 517 Location: 104649-104901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)