myRT

myRT report for GCA_002855675.1_ASM285567v1

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Seq: NBSZ01000008.1 Escherichia coli strain Ec-HUCA 1 NODE_225_length_17017_cov_25.114826, whole genome shotgun sequence (17105 bp)
Overview 1 RT 1: 4163-9890 bp Neighborhood of RT #1 [4163, 10132] YeeP RVT-UG1 GerD Feature: gene Location: 4163-4348 bp Feature: gene Location: 4525-5397 bp Feature: domain Description: YeeP Location: 4528-5395 bp Feature: domain Description: YeeP Location: 4528-5395 bp Feature: gene Location: 6001-8472 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 6613-7123 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 661 3-71 23 bp Feature: gene Location: 8574-9689 bp Feature: gene Location: 9698-10132 bp Feature: domain Description: GerD Location: 9776-9890 bp Feature: domain Description: GerD Location: 9776-9890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-UG1, GerD (pfam17898)

Seq: NBSZ01000061.1 Escherichia coli strain Ec-HUCA 1 NODE_233_length_330390_cov_21.041748, whole genome shotgun sequence (330478 bp)
Overview 1 RT 1: 276812-280753 bp Neighborhood of RT #1 [276812, 280753] RVT-Retrons Feature: gene Location: 276812-277951 bp Feature: gene Location: 277997-278164 bp Feature: gene Location: 278186-279958 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 278345-278963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 78345-2 78963 bp Feature: gene Location: 280179-280322 bp Feature: gene Location: 280514-280753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NBSZ01000066.1 Escherichia coli strain Ec-HUCA 1 NODE_43_length_11288_cov_58.008240, whole genome shotgun sequence (11376 bp)
Overview 1 RT 1: 10331-11216 bp Neighborhood of RT #1 [10331, 11374] PRK10173 PRK10173 RVT-GII Feature: gene Location: 10331-10780 bp Feature: domain Description: PRK10173 Location: 10334-10772 bp Feature: domain Description: PRK10173 Location: 103 3 4-10772 bp Feature: gene Location: 10764-11075 bp Feature: domain Description: PRK10173 Location: 10767-10986 bp Feature: domain Description: PRK10173 Location: 10767-10986 bp Feature: gene Location: 11114-11374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11144-11216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11144-11216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: NBSZ01000075.1 Escherichia coli strain Ec-HUCA 1 NODE_79_length_897_cov_144.249725, whole genome shotgun sequence (985 bp)
Overview 1 RT 1: 3-982 bp Neighborhood of RT #1 [3, 982] RVT-GII Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 623-982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NBSZ01000067.1 Escherichia coli strain Ec-HUCA 1 NODE_94_length_1301_cov_84.710991, whole genome shotgun sequence (1389 bp)
Overview 1 RT 1: 107-1142 bp Neighborhood of RT #1 [107, 1387] RVT-GII GIIM Feature: gene Location: 107-1387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137-869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137-869 bp Feature: domain Description: GIIM Note: maturase Location: 944-1142 bp Feature: domain Description: GIIM Note: maturase Location: 944-1142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)