myRT

myRT report for GCA_002855695.1_ASM285569v1

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Seq: NBSU01000065.1 Escherichia coli strain Ec-HUCA 6 NODE_44_length_205920_cov_14.491424, whole genome shotgun sequence (206008 bp)
Overview 1 RT 1: 100583-104476 bp 2 RT 2: 123392-127778 bp Neighborhood of RT #1 [100583, 104476] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [123392, 127778] RVT-Retrons Feature: gene Location: 100583-100867 bp Feature: domain Description: InsE Location: 100595-100856 bp Feature: domain Description: InsE Location: 1 00595-1 00856 bp Feature: gene Location: 100915-101334 bp Feature: domain Description: PHA02517 Location: 100930-101269 bp Feature: domain Description: PHA0251 7 Location: 1 00930-1 01 269 bp Feature: gene Location: 101926-103449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102199-102931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 021 99-1 02931 bp Feature: domain Description: GIIM Note: maturase Location: 103006-103204 bp Feature: domain Description: GIIM Note: maturase Location: 1 03006-1 03204 bp Feature: gene Location: 103572-103988 bp Feature: domain Description: PHA02517 Location: 103575-103980 bp Feature: domain Description: PHA0251 7 Location: 1 03575-1 03980 bp Feature: gene Location: 104306-104476 bp Feature: gene Location: 123392-124531 bp Feature: gene Location: 124577-124744 bp Feature: gene Location: 124766-126538 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 124925-125543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 24925-1 25543 bp Feature: gene Location: 127094-127333 bp Feature: gene Location: 127548-127778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), RVT-Retrons

Seq: NBSU01000084.1 Escherichia coli strain Ec-HUCA 6 NODE_81_length_13214_cov_14.660739, whole genome shotgun sequence (13302 bp)
Overview 1 RT 1: 1904-6148 bp Neighborhood of RT #1 [1904, 6148] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 1904-2806 bp Feature: domain Description: Macro_Appr_pase Location: 1922-2435 bp Feature: domain Description: Macro_Appr_pase Location: 192 2 -2 435 bp Feature: gene Location: 2815-3399 bp Feature: domain Description: Caudo_TAP Location: 3031-3388 bp Feature: domain Description: Caudo_TAP Location: 3031-3388 bp Feature: gene Location: 3512-4882 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3740-4346 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3740-4346 bp Feature: gene Location: 4860-5564 bp Feature: domain Description: SLATT_5 Location: 5022-5532 bp Feature: domain Description: SLATT_5 Location: 502 2 -5532 bp Feature: gene Location: 5972-6148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)