myRT

myRT report for GCA_002856765.1_ASM285676v1

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Seq: PIBS01001484.1 Klebsiella pneumoniae strain A3 NODE_1484_length_802_cov_1.76741, whole genome shotgun sequence (802 bp)
Overview 1 RT 1: 1-379 bp Neighborhood of RT #1 [1, 801] RVT-UG8 Feature: gene Location: 1-801 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4-379 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4-379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8

Seq: PIBS01000252.1 Klebsiella pneumoniae strain A3 NODE_252_length_6027_cov_2.89764, whole genome shotgun sequence (6027 bp)
Overview 1 RT 1: 3-4690 bp Neighborhood of RT #1 [3, 4701] RVT-GII GIIM KOG2108 KOG2108 KOG2108 ICE_TraI_Pfluor TraI_2_C Feature: gene Location: 3-1379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321-939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 1-939 bp Feature: domain Description: GIIM Note: maturase Location: 993-1218 bp Feature: domain Description: GIIM Note: maturase Location: 993-12 18 bp Feature: gene Location: 1540-3015 bp Feature: domain Description: KOG2108 Location: 1597-1768 bp Feature: domain Description: KOG2 108 Location: 1597-1768 bp Feature: domain Description: KOG2108 Location: 2029-2341 bp Feature: domain Description: KOG2 108 Location: 2 02 9-2 341 bp Feature: domain Description: KOG2108 Location: 2638-2911 bp Feature: domain Description: KOG2 108 Location: 2 638-2 911 bp Feature: gene Location: 3082-4701 bp Feature: domain Description: ICE_TraI_Pfluor Location: 3172-3799 bp Feature: domain Description: ICE_TraI_Pfluor Location: 3172 -3799 bp Feature: domain Description: TraI_2_C Location: 4342-4690 bp Feature: domain Description: TraI_2 _C Location: 4342 -4690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG2108 (KOG2108, 3'-5' DNA helicase ), ICE_TraI_Pfluor (TIGR03760), TraI_2_C (pfam07515)

Seq: PIBS01000496.1 Klebsiella pneumoniae strain A3 NODE_496_length_3824_cov_25.304, whole genome shotgun sequence (3824 bp)
Overview 1 RT 1: 3-3373 bp Neighborhood of RT #1 [3, 3765] RVT-GII RVT-GII Feature: gene Location: 3-215 bp Feature: gene Location: 369-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: gene Location: 2278-3765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2683-3373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2683 -3 3 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PIBS01000049.1 Klebsiella pneumoniae strain A3 NODE_49_length_12401_cov_3.22055, whole genome shotgun sequence (12401 bp)
Overview 1 RT 1: 4940-11808 bp Neighborhood of RT #1 [4940, 11810] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 4940-5668 bp Feature: domain Description: FimC Location: 4973-5651 bp Feature: domain Description: FimC Location: 4 973-5651 bp Feature: gene Location: 5700-8309 bp Feature: domain Description: FimD Location: 5757-8298 bp Feature: domain Description: FimD Location: 5757-8298 bp Feature: gene Location: 8309-10387 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 8717-9161 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 8717-9161 bp Feature: gene Location: 10444-10884 bp Feature: domain Description: Integrase_1 Location: 10450-10666 bp Feature: domain Description: Integrase_1 Location: 104 50-10666 bp Feature: gene Location: 11145-11810 bp Feature: domain Description: INT_P4_C Location: 11250-11808 bp Feature: domain Description: INT_P4 _C Location: 11250-11808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: PIBS01000569.1 Klebsiella pneumoniae strain A3 NODE_569_length_3408_cov_2.33923, whole genome shotgun sequence (3408 bp)
Overview 1 RT 1: 1-1958 bp Neighborhood of RT #1 [1, 1972] RVT-UG3 INT_P4_C PRK09692 Feature: gene Location: 1-624 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 289-619 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 289-619 bp Feature: gene Location: 803-1468 bp Feature: domain Description: INT_P4_C Location: 911-1442 bp Feature: domain Description: INT_P4_C Location: 911-1442 bp Feature: gene Location: 1481-1972 bp Feature: domain Description: PRK09692 Location: 1487-1958 bp Feature: domain Description: PRK09692 Location: 1487-195 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, INT_P4_C (cd00801), PRK09692 (Integrase; provisional)

Seq: PIBS01000641.1 Klebsiella pneumoniae strain A3 NODE_641_length_3041_cov_1.93205, whole genome shotgun sequence (3041 bp)
Overview 1 RT 1: 2-2972 bp Neighborhood of RT #1 [2, 3040] RVT-Retrons COG3950 Feature: gene Location: 2-205 bp Feature: gene Location: 631-1596 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 739-1336 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 739-1336 bp Feature: gene Location: 1574-3040 bp Feature: domain Description: COG3950 Location: 1754-2972 bp Feature: domain Description: COG3950 Location: 1754-2972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence )