myRT

myRT report for GCA_002858665.1_ASM285866v1

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Seq: PJQQ01000014.1 Pseudomonas sp. FFUP_PS_473 NODE_14_length_134933_cov_78.253856_pilon, whole genome shotgun sequence (134933 bp)
Overview 1 RT 1: 28749-34095 bp Neighborhood of RT #1 [28749, 34103] pgm_bpd_ind RVT_N RVT-GII YkfC HNHc RHOD GRX_bact Feature: gene Location: 28749-30284 bp Feature: domain Description: pgm_bpd_ind Location: 28767-30273 bp Feature: domain Description: pgm_bpd_ind Location: 28767-30273 bp Feature: gene Location: 31239-31457 bp Feature: gene Location: 31544-33271 bp Feature: domain Description: RVT_N Location: 31604-31847 bp Feature: domain Description: RVT_N Location: 31 604-31 847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31895-32546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 895-32546 bp Feature: domain Description: YkfC Location: 32699-32906 bp Feature: domain Description: YkfC Location: 32699-32906 bp Feature: domain Description: HNHc Note: nucleases Location: 33077-33236 bp Feature: domain Description: HNHc Note: nucleases Location: 33077-33236 bp Feature: gene Location: 33414-33845 bp Feature: domain Description: RHOD Location: 33558-33819 bp Feature: domain Description: RHOD Location: 33558-3381 9 bp Feature: gene Location: 33849-34103 bp Feature: domain Description: GRX_bact Location: 33861-34095 bp Feature: domain Description: GRX_bact Location: 33861 -34095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pgm_bpd_ind (TIGR01307), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), RHOD (smart00450), GRX_bact (TIGR02181)

Seq: PJQQ01000015.1 Pseudomonas sp. FFUP_PS_473 NODE_15_length_134689_cov_85.879832_pilon, whole genome shotgun sequence (134689 bp)
Overview 1 RT 1: 129827-134651 bp Neighborhood of RT #1 [129827, 134686] SMC_prok_B Tar Tra8 RVT-UG5 Tra8 Feature: gene Location: 129827-131425 bp Feature: domain Description: SMC_prok_B Location: 129920-130175 bp Feature: domain Description: SMC_prok_B Location: 12 992 0-130175 bp Feature: domain Description: Tar Location: 130304-131423 bp Feature: domain Description: Tar Location: 130304-13142 3 bp Feature: gene Location: 131828-132139 bp Feature: domain Description: Tra8 Location: 131834-132071 bp Feature: domain Description: Tra8 Location: 131834-132 071 bp Feature: gene Location: 132187-134064 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 132715-133213 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 132 715-1332 13 bp Feature: gene Location: 134084-134221 bp Feature: gene Location: 134264-134686 bp Feature: domain Description: Tra8 Location: 134267-134651 bp Feature: domain Description: Tra8 Location: 1342 67-134651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), Tar (COG0840), Tra8 (COG2826), RVT-UG5

Seq: PJQQ01000058.1 Pseudomonas sp. FFUP_PS_473 NODE_58_length_17373_cov_64.951781_pilon, whole genome shotgun sequence (17373 bp)
Overview 1 RT 1: 10704-14455 bp Neighborhood of RT #1 [10704, 14455] IS5 RVT_N RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 10704-11177 bp Feature: domain Description: IS5 Location: 10890-11151 bp Feature: domain Description: IS5 Location: 10890-11151 bp Feature: gene Location: 11195-11791 bp Feature: gene Location: 11832-13337 bp Feature: domain Description: RVT_N Location: 11910-12144 bp Feature: domain Description: RVT_N Location: 11910-12144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12189-12831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12189-1283 1 bp Feature: domain Description: GIIM Note: maturase Location: 12882-13116 bp Feature: domain Description: GIIM Note: maturase Location: 12882-13 116 bp Feature: gene Location: 13449-13868 bp Feature: domain Description: DDE_Tnp_1 Location: 13455-13818 bp Feature: domain Description: DDE_Tnp_1 Location: 13 455-13 818 bp Feature: gene Location: 14318-14455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: PJQQ01000086.1 Pseudomonas sp. FFUP_PS_473 NODE_86_length_1552_cov_1423.276610_pilon, whole genome shotgun sequence (1552 bp)
Overview 1 RT 1: 72-1551 bp Neighborhood of RT #1 [72, 1551] RVT-GII GIIM Feature: gene Location: 72-1328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264-879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264 -879 bp Feature: domain Description: GIIM Note: maturase Location: 933-1149 bp Feature: domain Description: GIIM Note: maturase Location: 933-114 9 bp Feature: gene Location: 1333-1551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PJQQ01000008.1 Pseudomonas sp. FFUP_PS_473 NODE_8_length_181374_cov_52.899491_pilon, whole genome shotgun sequence (181374 bp)
Overview 1 RT 1: 1-2962 bp Neighborhood of RT #1 [1, 3285] RVT-GII GIIM PRK12937 PLN02244 Feature: gene Location: 1-1242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178-793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178-793 bp Feature: domain Description: GIIM Note: maturase Location: 847-1075 bp Feature: domain Description: GIIM Note: maturase Location: 847-1075 bp Feature: gene Location: 1376-2125 bp Feature: domain Description: PRK12937 Location: 1397-2117 bp Feature: domain Description: PRK12937 Location: 1397-2117 bp Feature: gene Location: 2455-3285 bp Feature: domain Description: PLN02244 Location: 2650-2962 bp Feature: domain Description: PLN02244 Location: 265 0-2962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK12937 (short chain dehydrogenase; Provisional), PLN02244 (tocopherol O-methyltransferase)