myRT

myRT report for GCA_002861225.1_ASM286122v1

Download annotations/find similar RTs

Seq: PKHH01000012.1 Escherichia coli strain UMB0901 .16933_8_30.12, whole genome shotgun sequence (102569 bp)
Overview 1 RT 1: 99647-101827 bp Neighborhood of RT #1 [99647, 102480] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 99647-99937 bp Feature: gene Location: 99947-101008 bp Feature: domain Description: HTH_29 Location: 100067-100238 bp Feature: domain Description: HTH_29 Location: 1 00067-1 00238 bp Feature: domain Description: HTH_33 Location: 100271-100433 bp Feature: domain Description: HTH_33 Location: 1 00271 -1 00433 bp Feature: domain Description: DDE_3 Location: 100475-100904 bp Feature: domain Description: DDE_3 Location: 1 00475-1 00904 bp Feature: gene Location: 101110-102480 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101371-101827 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 01 371 -1 01 827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: PKHH01000014.1 Escherichia coli strain UMB0901 .16933_8_30.14, whole genome shotgun sequence (93827 bp)
Overview 1 RT 1: 92756-93665 bp Neighborhood of RT #1 [92756, 93826] PRK10173 PRK10173 RVT-GII Feature: gene Location: 92756-93205 bp Feature: domain Description: PRK10173 Location: 92759-93197 bp Feature: domain Description: PRK10173 Location: 92 759-93197 bp Feature: gene Location: 93189-93500 bp Feature: domain Description: PRK10173 Location: 93192-93411 bp Feature: domain Description: PRK10173 Location: 93192 -93411 bp Feature: gene Location: 93539-93826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93596-93665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93596-93665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: PKHH01000021.1 Escherichia coli strain UMB0901 .16933_8_30.21, whole genome shotgun sequence (15014 bp)
Overview 1 RT 1: 3-1335 bp Neighborhood of RT #1 [3, 1400] RVT-GII PHA02517 Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-3 3 0 bp Feature: gene Location: 283-708 bp Feature: gene Location: 921-1400 bp Feature: domain Description: PHA02517 Location: 981-1335 bp Feature: domain Description: PHA02517 Location: 981-13 3 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: PKHH01000024.1 Escherichia coli strain UMB0901 .16933_8_30.24, whole genome shotgun sequence (4279 bp)
Overview 1 RT 1: 2064-4032 bp Neighborhood of RT #1 [2064, 4277] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 2064-2468 bp Feature: domain Description: InsE Location: 2094-2430 bp Feature: domain Description: InsE Location: 2094 -24 30 bp Feature: gene Location: 2497-2853 bp Feature: domain Description: PHA02517 Location: 2500-2809 bp Feature: domain Description: PHA02517 Location: 2500-2809 bp Feature: gene Location: 2970-4277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3027-3759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3027-3759 bp Feature: domain Description: GIIM Note: maturase Location: 3834-4032 bp Feature: domain Description: GIIM Note: maturase Location: 3834 -4 032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)