myRT

myRT report for GCA_002862125.1_ASM286212v1

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Seq: PHSP01000001.1 Methylobacter sp. KS41, whole genome shotgun sequence (2423795 bp)
Overview 1 RT 1: 759100-765257 bp 2 RT 2: 1268937-1275664 bp 3 RT 3: 1582151-1587756 bp 4 RT 4: 2210169-2216404 bp Neighborhood of RT #1 [759100, 765257] INT_tnpB_C_Tn554 umuC RVT-GII GIIM Neighborhood of RT #2 [1268937, 1275664] YchJ RVT-UG28 PRK06567 PRK06567 PRK06567 PRK06567 Neighborhood of RT #3 [1582151, 1587758] Arm-DNA-bind_3 INT_P4_C RVT-GII GIIM ispF Neighborhood of RT #4 [2210169, 2216404] MhpC CspC RVT-GII GIIM TrHb2_PhHbO-like_O Feature: gene Location: 759100-761283 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 760282-760867 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 760282-760867 bp Feature: gene Location: 761323-762633 bp Feature: domain Description: umuC Location: 761374-762625 bp Feature: domain Description: umuC Location: 761 374-762625 bp Feature: gene Location: 763308-764654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763587-764280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763587-764280 bp Feature: domain Description: GIIM Note: maturase Location: 764364-764562 bp Feature: domain Description: GIIM Note: maturase Location: 764364-764562 bp Feature: gene Location: 764629-764865 bp Feature: gene Location: 765105-765257 bp Feature: gene Location: 1268937-1269422 bp Feature: domain Description: YchJ Location: 1268952-1269414 bp Feature: domain Description: YchJ Location: 1 268952-1 26941 4 bp Feature: gene Location: 1269732-1269884 bp Feature: gene Location: 1269912-1271408 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1270197-1270836 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1 2701 97-1 270836 bp Feature: gene Location: 1271675-1275385 bp Feature: domain Description: PRK06567 Location: 1271744-1272020 bp Feature: domain Description: PRK06567 Location: 1 271 744-1 272020 bp Feature: domain Description: PRK06567 Location: 1272500-1273952 bp Feature: domain Description: PRK06567 Location: 1 272500-1 273952 bp Feature: domain Description: PRK06567 Location: 1274210-1274825 bp Feature: domain Description: PRK06567 Location: 1 27421 0-1 274825 bp Feature: domain Description: PRK06567 Location: 1275026-1275335 bp Feature: domain Description: PRK06567 Location: 1 275026-1 275335 bp Feature: gene Location: 1275470-1275664 bp Feature: gene Location: 1582151-1583161 bp Feature: gene Location: 1583173-1584417 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1583185-1583443 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 5831 85-1 583443 bp Feature: domain Description: INT_P4_C Location: 1583824-1584361 bp Feature: domain Description: INT_P4_C Location: 1 583824-1 584361 bp Feature: gene Location: 1584750-1586036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1585008-1585674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 585008-1 585674 bp Feature: domain Description: GIIM Note: maturase Location: 1585782-1585974 bp Feature: domain Description: GIIM Note: maturase Location: 1 585782-1 585974 bp Feature: gene Location: 1586926-1587099 bp Feature: gene Location: 1587285-1587758 bp Feature: domain Description: ispF Location: 1587288-1587756 bp Feature: domain Description: ispF Location: 1 587288-1 587756 bp Feature: gene Location: 2210169-2210945 bp Feature: domain Description: MhpC Location: 2210193-2210919 bp Feature: domain Description: MhpC Location: 221 01 93-221 091 9 bp Feature: gene Location: 2211136-2211348 bp Feature: domain Description: CspC Location: 2211151-2211343 bp Feature: domain Description: CspC Location: 221 1 1 51 -221 1 343 bp Feature: gene Location: 2212082-2213368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2212340-2213006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 2340-221 3006 bp Feature: domain Description: GIIM Note: maturase Location: 2213114-2213306 bp Feature: domain Description: GIIM Note: maturase Location: 221 31 1 4-221 3306 bp Feature: gene Location: 2214088-2214480 bp Feature: domain Description: TrHb2_PhHbO-like_O Location: 2214109-2214463 bp Feature: domain Description: TrHb2_PhHbO-like_O Location: 221 41 09-221 4463 bp Feature: gene Location: 2214692-2216404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_tnpB_C_Tn554 (cd01187), umuC (PRK03609), RVT-GII, GIIM (pfam08388), YchJ (COG3012), RVT-UG28, PRK06567 (putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), ispF (TIGR00151)
MhpC (COG0596), CspC (COG1278), TrHb2_PhHbO-like_O (cd14773)

Seq: PHSP01000003.1 Methylobacter sp. KS41, whole genome shotgun sequence (1736417 bp)
Overview 1 RT 1: 1580527-1584785 bp Neighborhood of RT #1 [1580527, 1584785] DUF1704 RVT-GII GIIM Feature: gene Location: 1580527-1581819 bp Feature: domain Description: DUF1704 Location: 1580656-1581772 bp Feature: domain Description: DUF1704 Location: 1580656-1581772 bp Feature: gene Location: 1581905-1582066 bp Feature: gene Location: 1582757-1584043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583015-1583681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583015-1583681 bp Feature: domain Description: GIIM Note: maturase Location: 1583789-1583981 bp Feature: domain Description: GIIM Note: maturase Location: 1583789-1583981 bp Feature: gene Location: 1584228-1584608 bp Feature: gene Location: 1584633-1584785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1704 (pfam08014), RVT-GII, GIIM (pfam08388)

Seq: PHSP01000004.1 Methylobacter sp. KS41, whole genome shotgun sequence (367887 bp)
Overview 1 RT 1: 228744-233723 bp Neighborhood of RT #1 [228744, 233929] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM YhhI YhhI Feature: gene Location: 228744-228926 bp Feature: gene Location: 229081-230652 bp Feature: domain Description: LZ_Tnp_IS66 Location: 229198-229402 bp Feature: domain Description: LZ_Tnp_IS66 Location: 229198-229402 bp Feature: domain Description: zf-IS66 Location: 229426-229555 bp Feature: domain Description: zf-IS66 Location: 229426-229555 bp Feature: domain Description: DDE_Tnp_IS66 Location: 229603-230467 bp Feature: domain Description: DDE_Tnp_IS66 Location: 229603 -23 0467 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 230488-230611 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 23 0488-23 0611 bp Feature: gene Location: 230786-232072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231044-231710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 1044-23 1710 bp Feature: domain Description: GIIM Note: maturase Location: 231818-232010 bp Feature: domain Description: GIIM Note: maturase Location: 23 1818-23 2010 bp Feature: gene Location: 232805-232984 bp Feature: gene Location: 232994-233929 bp Feature: domain Description: YhhI Location: 233069-233348 bp Feature: domain Description: YhhI Location: 23 3 069-23 3 3 48 bp Feature: domain Description: YhhI Location: 233414-233723 bp Feature: domain Description: YhhI Location: 23 3 414-23 3 723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), YhhI (COG5433)