myRT

myRT report for GCA_002862505.1_ASM286250v1

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Seq: PKDF01000426.1 Pseudomonas sp. isolate Gammapro4 c_000000041768, whole genome shotgun sequence (2738 bp)
Overview 1 RT 1: 271-1243 bp Neighborhood of RT #1 [271, 2736] RVT-UG5 Feature: gene Location: 271-2736 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 748-1243 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 748-1 243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5

Seq: PKDF01000296.1 Pseudomonas sp. isolate Gammapro4 c_000000197925, whole genome shotgun sequence (19072 bp)
Overview 1 RT 1: 10440-16869 bp Neighborhood of RT #1 [10440, 16874] Methyltransf_25 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 10440-11120 bp Feature: domain Description: Methyltransf_25 Location: 10605-10887 bp Feature: domain Description: Methyltransf_2 5 Location: 10605-10887 bp Feature: gene Location: 11386-11610 bp Feature: gene Location: 12014-13705 bp Feature: domain Description: RVT_N Location: 12068-12308 bp Feature: domain Description: RVT_N Location: 12 068-12 308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12356-13001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 356-13001 bp Feature: domain Description: GIIM Note: maturase Location: 13052-13286 bp Feature: domain Description: GIIM Note: maturase Location: 13052 -132 86 bp Feature: domain Description: HNHc Note: nucleases Location: 13505-13658 bp Feature: domain Description: HNHc Note: nucleases Location: 13505-13658 bp Feature: gene Location: 14740-16386 bp Feature: domain Description: groEL Location: 14746-16366 bp Feature: domain Description: groEL Location: 14746-16366 bp Feature: gene Location: 16434-16874 bp Feature: domain Description: groES Location: 16584-16869 bp Feature: domain Description: groES Location: 16584-16869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_25 (pfam13649), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: PKDF01000057.1 Pseudomonas sp. isolate Gammapro4 c_000000203023, whole genome shotgun sequence (8688 bp)
Overview 1 RT 1: 2258-8528 bp Neighborhood of RT #1 [2258, 8569] RVT-UG5 DUF3987 AlpA Feature: gene Location: 2258-2518 bp Feature: gene Location: 2951-3091 bp Feature: gene Location: 3323-6499 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3854-4352 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 854-43 52 bp Feature: gene Location: 6663-8168 bp Feature: domain Description: DUF3987 Location: 6852-7932 bp Feature: domain Description: DUF3 987 Location: 6852-793 2 bp Feature: gene Location: 8165-8569 bp Feature: domain Description: AlpA Location: 8423-8528 bp Feature: domain Description: AlpA Location: 8423 -8528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, DUF3987 (pfam13148), AlpA (COG3311)

Seq: PKDF01000205.1 Pseudomonas sp. isolate Gammapro4 c_000000205114, whole genome shotgun sequence (15829 bp)
Overview 1 RT 1: 3414-6700 bp Neighborhood of RT #1 [3414, 6753] RVT-G2L4 xerC Feature: gene Location: 3414-3740 bp Feature: gene Location: 3794-3988 bp Feature: gene Location: 4023-5303 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 4269-4854 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 4 269-4 854 bp Feature: gene Location: 5463-5669 bp Feature: gene Location: 5698-6753 bp Feature: domain Description: xerC Location: 5908-6700 bp Feature: domain Description: xerC Location: 5908-6700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, xerC (PRK01287)

Seq: PKDF01000092.1 Pseudomonas sp. isolate Gammapro4 c_000000233731, whole genome shotgun sequence (24516 bp)
Overview 1 RT 1: 1387-9091 bp Neighborhood of RT #1 [1387, 9147] RVT-UG2 SSL2 COG3666 DDE_Tnp_1 Feature: gene Location: 1387-1848 bp Feature: gene Location: 2106-2438 bp Feature: gene Location: 2446-3729 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2638-3424 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2638-3424 bp Feature: gene Location: 4468-7479 bp Feature: domain Description: SSL2 Location: 4621-5620 bp Feature: domain Description: SSL2 Location: 4621-5 620 bp Feature: gene Location: 7717-9147 bp Feature: domain Description: COG3666 Location: 7729-8203 bp Feature: domain Description: COG3666 Location: 7729-8203 bp Feature: domain Description: DDE_Tnp_1 Location: 8395-9091 bp Feature: domain Description: DDE_Tnp_1 Location: 8395 -9091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, SSL2 (COG1061), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609)