myRT

myRT report for GCA_002863245.1_ASM286324v1

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Seq: PKKH01000011.1 Lactobacillus crispatus strain UMB0040 ERR1203629.17957_1_41.11, whole genome shotgun sequence (50844 bp)
Overview 1 RT 1: 42058-47176 bp Neighborhood of RT #1 [42058, 47775] HTH_LacI PBP1_Qymf_like RVT-GII GIIM SunT HipB Feature: gene Location: 42058-43044 bp Feature: domain Description: HTH_LacI Location: 42079-42226 bp Feature: domain Description: HTH_LacI Location: 42079-42226 bp Feature: domain Description: PBP1_Qymf_like Location: 42244-43039 bp Feature: domain Description: PBP1 _Qymf_like Location: 42244-43039 bp Feature: gene Location: 43120-43407 bp Feature: gene Location: 43362-44417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43563-44181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43563-441 81 bp Feature: domain Description: GIIM Note: maturase Location: 44238-44370 bp Feature: domain Description: GIIM Note: maturase Location: 44238-44370 bp Feature: gene Location: 45024-46601 bp Feature: domain Description: SunT Location: 45072-46593 bp Feature: domain Description: SunT Location: 45072-46593 bp Feature: gene Location: 46930-47775 bp Feature: domain Description: HipB Location: 46960-47176 bp Feature: domain Description: HipB Location: 46960-471 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_LacI (cd01392), PBP1_Qymf_like, RVT-GII, GIIM (pfam08388), SunT (COG2274), HipB (COG1396)

Seq: PKKH01000017.1 Lactobacillus crispatus strain UMB0040 ERR1203629.17957_1_41.17, whole genome shotgun sequence (38432 bp)
Overview 1 RT 1: 34120-37876 bp Neighborhood of RT #1 [34120, 37876] PRK09311 ribH RVT-GII group_II_RT_mat Feature: gene Location: 34120-35298 bp Feature: domain Description: PRK09311 Location: 34129-35290 bp Feature: domain Description: PRK09311 Location: 3412 9-352 90 bp Feature: gene Location: 35313-35777 bp Feature: domain Description: ribH Location: 35316-35772 bp Feature: domain Description: ribH Location: 35316-35772 bp Feature: gene Location: 36052-36276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36055-36154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36055-36154 bp Feature: gene Location: 36402-36584 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 36435-36558 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 36435-36558 bp Feature: gene Location: 37550-37876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09311 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II), ribH (PRK00061), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: PKKH01000033.1 Lactobacillus crispatus strain UMB0040 ERR1203629.17957_1_41.33, whole genome shotgun sequence (23120 bp)
Overview 1 RT 1: 20375-23013 bp Neighborhood of RT #1 [20375, 23024] dTDP_sugar_isom RmlD_sub_bind RVT-AbiA Feature: gene Location: 20375-20983 bp Feature: domain Description: dTDP_sugar_isom Location: 20414-20969 bp Feature: domain Description: dTDP_sugar_isom Location: 20414-20969 bp Feature: gene Location: 21000-21986 bp Feature: domain Description: RmlD_sub_bind Location: 21003-21948 bp Feature: domain Description: RmlD_sub_bind Location: 21003 -21948 bp Feature: gene Location: 22146-23024 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 22515-23013 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 22515-23 013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dTDP_sugar_isom (pfam00908), RmlD_sub_bind (pfam04321), RVT-AbiA

Seq: PKKH01000097.1 Lactobacillus crispatus strain UMB0040 ERR1203629.17957_1_41.97, whole genome shotgun sequence (408 bp)
Overview 1 RT 1: 3-321 bp Neighborhood of RT #1 [3, 407] RVT-GII Feature: gene Location: 3-407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII