myRT

myRT report for GCA_002864775.1_ASM286477v1

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Seq: PJCJ01000017.1 Pseudomonas plecoglossicida strain MR69 MR69_17, whole genome shotgun sequence (107833 bp)
Overview 1 RT 1: 103304-107794 bp Neighborhood of RT #1 [103304, 107832] TnpB_IS66 RVT-GII DDE_Tnp_1_2 Feature: gene Location: 103304-104113 bp Feature: domain Description: TnpB_IS66 Location: 103331-103613 bp Feature: domain Description: TnpB_IS66 Location: 1 03331 -1 0361 3 bp Feature: gene Location: 104164-104493 bp Feature: gene Location: 104837-106603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105521-106211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 05521 -1 0621 1 bp Feature: gene Location: 107494-107832 bp Feature: domain Description: DDE_Tnp_1_2 Location: 107542-107794 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 1 07542-1 07794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, DDE_Tnp_1_2 (pfam13586)

Seq: PJCJ01000024.1 Pseudomonas plecoglossicida strain MR69 MR69_24, whole genome shotgun sequence (77299 bp)
Overview 1 RT 1: 45075-49778 bp Neighborhood of RT #1 [45075, 49778] HDc DDE_Tnp_IS66_C RVT_N RVT-GII GIIM COG3436 DDE_Tnp_IS66 Feature: gene Location: 45075-45878 bp Feature: domain Description: HDc Location: 45276-45651 bp Feature: domain Description: HDc Location: 452 76-45651 bp Feature: gene Location: 45914-46048 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 45920-46031 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4592 0-46031 bp Feature: gene Location: 46240-47799 bp Feature: RT Description: RVT_N Location: 46243-46426 bp Feature: RT Description: RVT_N Location: 462 43-4642 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46471-47107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46471-47107 bp Feature: domain Description: GIIM Note: maturase Location: 47164-47392 bp Feature: domain Description: GIIM Note: maturase Location: 47164-47392 bp Feature: gene Location: 48274-49515 bp Feature: domain Description: COG3436 Location: 48685-48979 bp Feature: domain Description: COG3436 Location: 48685-48979 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48994-49312 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48994-49312 bp Feature: gene Location: 49587-49778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDc (smart00471), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050)