myRT

myRT report for GCA_002864795.1_ASM286479v1

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Seq: PJCM01000019.1 Pseudomonas plecoglossicida strain MR135 MR135_19, whole genome shotgun sequence (96693 bp)
Overview 1 RT 1: 86482-91382 bp Neighborhood of RT #1 [86482, 91528] TnpB_IS66 RVT-GII COG3293 DUF4096 Feature: gene Location: 86482-87291 bp Feature: domain Description: TnpB_IS66 Location: 86509-86791 bp Feature: domain Description: TnpB_IS66 Location: 86509-86791 bp Feature: gene Location: 87342-87671 bp Feature: gene Location: 88015-89781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88699-89389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88699-89389 bp Feature: gene Location: 90672-91112 bp Feature: domain Description: COG3293 Location: 90678-91074 bp Feature: domain Description: COG3293 Location: 90678-91 074 bp Feature: gene Location: 91148-91528 bp Feature: domain Description: DUF4096 Location: 91169-91382 bp Feature: domain Description: DUF4096 Location: 91 1 69-91 382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, COG3293 (Transposase ), DUF4096 (pfam13340)

Seq: PJCM01000027.1 Pseudomonas plecoglossicida strain MR135 MR135_27, whole genome shotgun sequence (77299 bp)
Overview 1 RT 1: 45075-49778 bp Neighborhood of RT #1 [45075, 49778] HDc DDE_Tnp_IS66_C RVT_N RVT-GII GIIM COG3436 DDE_Tnp_IS66 Feature: gene Location: 45075-45878 bp Feature: domain Description: HDc Location: 45276-45651 bp Feature: domain Description: HDc Location: 452 76-45651 bp Feature: gene Location: 45914-46048 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 45920-46031 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4592 0-46031 bp Feature: gene Location: 46240-47799 bp Feature: RT Description: RVT_N Location: 46243-46426 bp Feature: RT Description: RVT_N Location: 462 43-4642 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46471-47107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46471-47107 bp Feature: domain Description: GIIM Note: maturase Location: 47164-47392 bp Feature: domain Description: GIIM Note: maturase Location: 47164-47392 bp Feature: gene Location: 48274-49515 bp Feature: domain Description: COG3436 Location: 48685-48979 bp Feature: domain Description: COG3436 Location: 48685-48979 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48994-49312 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48994-49312 bp Feature: gene Location: 49587-49778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDc (smart00471), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050)