myRT

myRT report for GCA_002864885.1_ASM286488v1

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Seq: PJCL01000011.1 Pseudomonas plecoglossicida strain MR134 MR134_11, whole genome shotgun sequence (176112 bp)
Overview 1 RT 1: 45075-50197 bp Neighborhood of RT #1 [45075, 50292] HDc DDE_Tnp_IS66_C RVT_N RVT-GII GIIM COG3436 DDE_Tnp_IS66 PinE Feature: gene Location: 45075-45878 bp Feature: domain Description: HDc Location: 45276-45651 bp Feature: domain Description: HDc Location: 45276-45651 bp Feature: gene Location: 45914-46048 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 45920-46031 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 45920-46031 bp Feature: gene Location: 46240-47799 bp Feature: RT Description: RVT_N Location: 46243-46426 bp Feature: RT Description: RVT_N Location: 46243-46426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46471-47107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46471 -471 07 bp Feature: domain Description: GIIM Note: maturase Location: 47164-47392 bp Feature: domain Description: GIIM Note: maturase Location: 471 64-47392 bp Feature: gene Location: 48274-49515 bp Feature: domain Description: COG3436 Location: 48685-48979 bp Feature: domain Description: COG3436 Location: 48685-48979 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48994-49312 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48994-4931 2 bp Feature: gene Location: 49813-50292 bp Feature: domain Description: PinE Location: 49981-50197 bp Feature: domain Description: PinE Location: 49981 -501 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDc (smart00471), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), PinE (COG1961)

Seq: PJCL01000022.1 Pseudomonas plecoglossicida strain MR134 MR134_22, whole genome shotgun sequence (90672 bp)
Overview 1 RT 1: 86143-90633 bp Neighborhood of RT #1 [86143, 90671] TnpB_IS66 RVT-GII DDE_Tnp_1_2 Feature: gene Location: 86143-86952 bp Feature: domain Description: TnpB_IS66 Location: 86170-86452 bp Feature: domain Description: TnpB_IS66 Location: 86170-86452 bp Feature: gene Location: 87003-87332 bp Feature: gene Location: 87676-89442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88360-89050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88360-89050 bp Feature: gene Location: 90333-90671 bp Feature: domain Description: DDE_Tnp_1_2 Location: 90381-90633 bp Feature: domain Description: DDE_Tnp_1_2 Location: 90381-90633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, DDE_Tnp_1_2 (pfam13586)