myRT

myRT report for GCA_002864985.1_ASM286498v1

Download annotations/find similar RTs

Seq: NBUC01000132.1 Sinorhizobium medicae strain Str16 scaffold24.1, whole genome shotgun sequence (112582 bp)
Overview 1 RT 1: 22741-27661 bp Neighborhood of RT #1 [22741, 27661] XerC HTH_17 group_II_RT_mat RVT-CRISPR-like Feature: gene Location: 22741-23937 bp Feature: domain Description: XerC Location: 22993-23836 bp Feature: domain Description: XerC Location: 22993-23836 bp Feature: gene Location: 23912-24313 bp Feature: domain Description: HTH_17 Location: 23999-24128 bp Feature: domain Description: HTH_1 7 Location: 23999-241 28 bp Feature: gene Location: 24397-26082 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 25117-25255 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 251 1 7-25255 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 25417-25594 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2541 7-25594 bp Feature: gene Location: 26484-26987 bp Feature: gene Location: 27176-27661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), HTH_17 (pfam12728), group_II_RT_mat (TIGR04416), RVT-CRISPR

Seq: NBUC01000009.1 Sinorhizobium medicae strain Str16 scaffold82.1, whole genome shotgun sequence (46679 bp)
Overview 1 RT 1: 27973-31526 bp Neighborhood of RT #1 [27973, 31526] InsE RVT-GII RVT-GII GIIM DDE_3 Feature: gene Location: 27973-28377 bp Feature: domain Description: InsE Location: 28018-28192 bp Feature: domain Description: InsE Location: 2 8018-2 8192 bp Feature: gene Location: 28425-28556 bp Feature: gene Location: 29157-30485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29373-29640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9373-2 9640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29646-30096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9646-30096 bp Feature: domain Description: GIIM Note: maturase Location: 30177-30399 bp Feature: domain Description: GIIM Note: maturase Location: 30177-30399 bp Feature: gene Location: 30678-31193 bp Feature: domain Description: DDE_3 Location: 30708-31080 bp Feature: domain Description: DDE_3 Location: 30708-31080 bp Feature: gene Location: 31281-31526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358)

Seq: NBUC01000195.1 Sinorhizobium medicae strain Str16 scaffold87.1, whole genome shotgun sequence (16639 bp)
Overview 1 RT 1: 8484-12711 bp Neighborhood of RT #1 [8484, 12722] Phage_int_SAM_1 INT_RitC_C_like RVT-GII Intron_maturas2 HNHc RVT-GII ArdC Feature: gene Location: 8484-9476 bp Feature: domain Description: Phage_int_SAM_1 Location: 8526-8769 bp Feature: domain Description: Phage_int_SAM_1 Location: 8526-8769 bp Feature: domain Description: INT_RitC_C_like Location: 8862-9402 bp Feature: domain Description: INT_RitC_C_like Location: 8862-9402 bp Feature: gene Location: 9532-9801 bp Feature: gene Location: 9819-10973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9966-10161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9966-10161 bp Feature: domain Description: Intron_maturas2 Location: 10242-10530 bp Feature: domain Description: Intron_maturas2 Location: 10242-1053 0 bp Feature: domain Description: HNHc Note: nucleases Location: 10695-10854 bp Feature: domain Description: HNHc Note: nucleases Location: 10695-10854 bp Feature: gene Location: 10970-11734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11237-11675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123 7-11675 bp Feature: gene Location: 11977-12327 bp Feature: gene Location: 12348-12722 bp Feature: domain Description: ArdC Location: 12369-12711 bp Feature: domain Description: ArdC Location: 123 69-12711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), Intron_maturas2 (pfam01348), HNHc (smart00507), ArdC (COG4227)

Seq: NBUC01000053.1 Sinorhizobium medicae strain Str16 scaffold9.1, whole genome shotgun sequence (49690 bp)
Overview 1 RT 1: 504-7060 bp Neighborhood of RT #1 [504, 7089] COG3436 RVT-GII RVT-GII GIIM DDE_3 SAM_superfamily TOMM_kin_cyc Feature: gene Location: 504-1265 bp Feature: domain Description: COG3436 Location: 747-1230 bp Feature: domain Description: COG34 36 Location: 74 7-1230 bp Feature: gene Location: 1325-2233 bp Feature: gene Location: 1778-3106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994-2534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994 -2534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2540-2717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254 0-2717 bp Feature: domain Description: GIIM Note: maturase Location: 2798-3014 bp Feature: domain Description: GIIM Note: maturase Location: 2798-3014 bp Feature: gene Location: 3192-3665 bp Feature: domain Description: DDE_3 Location: 3198-3567 bp Feature: domain Description: DDE_3 Location: 3198-3567 bp Feature: gene Location: 3922-7089 bp Feature: domain Description: SAM_superfamily Location: 3931-4087 bp Feature: domain Description: SAM_superfamily Location: 3931-4 087 bp Feature: domain Description: TOMM_kin_cyc Location: 4132-7060 bp Feature: domain Description: TOMM_kin_cyc Location: 4 132-7060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), SAM_superfamily (cl15755), TOMM_kin_cyc (TIGR03903), COG3436 (Transposase )