myRT

myRT report for GCA_002865035.1_ASM286503v1

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Seq: NBUG01000041.1 Sinorhizobium medicae strain Str12 scaffold16.1, whole genome shotgun sequence (134198 bp)
Overview 1 RT 1: 85058-89813 bp Neighborhood of RT #1 [85058, 89914] group_II_RT_mat RVT-CRISPR-like HTH_17 XerC Feature: gene Location: 85058-85543 bp Feature: gene Location: 85732-86235 bp Feature: gene Location: 86637-88322 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 87357-87495 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 87357-87495 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 87657-87834 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 87657-87834 bp Feature: gene Location: 88309-88743 bp Feature: domain Description: HTH_17 Location: 88429-88558 bp Feature: domain Description: HTH_1 7 Location: 88429-88558 bp Feature: gene Location: 88718-89914 bp Feature: domain Description: XerC Location: 88970-89813 bp Feature: domain Description: XerC Location: 88970-8981 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-CRISPR, HTH_17 (pfam12728), XerC (COG4973)

Seq: NBUG01000067.1 Sinorhizobium medicae strain Str12 scaffold27.1, whole genome shotgun sequence (88271 bp)
Overview 1 RT 1: 78750-83510 bp Neighborhood of RT #1 [78750, 83510] COG3930 RVT-GII GIIM DDE_3 Feature: gene Location: 78750-80633 bp Feature: domain Description: COG3930 Location: 79308-80625 bp Feature: domain Description: COG3930 Location: 79308-8062 5 bp Feature: gene Location: 80896-81804 bp Feature: gene Location: 81349-82608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81565-82219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81565-82 2 19 bp Feature: domain Description: GIIM Note: maturase Location: 82300-82516 bp Feature: domain Description: GIIM Note: maturase Location: 82 300-82 516 bp Feature: gene Location: 82662-83177 bp Feature: domain Description: DDE_3 Location: 82692-83064 bp Feature: domain Description: DDE_3 Location: 82 692 -83064 bp Feature: gene Location: 83265-83510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3930 (Uncharacterized protein ), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358)

Seq: NBUG01000189.1 Sinorhizobium medicae strain Str12 scaffold53.1, whole genome shotgun sequence (30165 bp)
Overview 1 RT 1: 15634-19861 bp Neighborhood of RT #1 [15634, 19872] Phage_int_SAM_1 INT_RitC_C_like RVT-GII Intron_maturas2 HNHc RVT-GII ArdC Feature: gene Location: 15634-16626 bp Feature: domain Description: Phage_int_SAM_1 Location: 15676-15919 bp Feature: domain Description: Phage_int_SAM_1 Location: 15676-15919 bp Feature: domain Description: INT_RitC_C_like Location: 16012-16552 bp Feature: domain Description: INT_RitC_C_like Location: 16012-16552 bp Feature: gene Location: 16682-16951 bp Feature: gene Location: 16969-18123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17116-17311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17116-173 11 bp Feature: domain Description: Intron_maturas2 Location: 17392-17680 bp Feature: domain Description: Intron_maturas2 Location: 173 92-17680 bp Feature: domain Description: HNHc Note: nucleases Location: 17845-18004 bp Feature: domain Description: HNHc Note: nucleases Location: 17845-18004 bp Feature: gene Location: 18120-18884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18387-18825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 87-18825 bp Feature: gene Location: 19127-19477 bp Feature: gene Location: 19498-19872 bp Feature: domain Description: ArdC Location: 19519-19861 bp Feature: domain Description: ArdC Location: 19519-19861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ArdC (COG4227)

Seq: NBUG01000165.1 Sinorhizobium medicae strain Str12 scaffold77.1, whole genome shotgun sequence (15431 bp)
Overview 1 RT 1: 35-2405 bp Neighborhood of RT #1 [35, 2590] RVT-GII GIIM RVT-GII InsE Feature: gene Location: 35-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41-491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1-4 91 bp Feature: domain Description: GIIM Note: maturase Location: 572-794 bp Feature: domain Description: GIIM Note: maturase Location: 572-794 bp Feature: gene Location: 900-1406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-14 01 bp Feature: gene Location: 2007-2138 bp Feature: gene Location: 2186-2590 bp Feature: domain Description: InsE Location: 2231-2405 bp Feature: domain Description: InsE Location: 2231-24 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963)