myRT

myRT report for GCA_002865055.1_ASM286505v1

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Seq: NBUH01000010.1 Sinorhizobium medicae strain Str11 scaffold10.1, whole genome shotgun sequence (154036 bp)
Overview 1 RT 1: 2922-6591 bp Neighborhood of RT #1 [2922, 6692] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C ygfB_yecA Feature: gene Location: 2922-3434 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3195-3411 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 95-341 1 bp Feature: gene Location: 3494-4402 bp Feature: gene Location: 3947-5206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4163-4817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 63-481 7 bp Feature: domain Description: GIIM Note: maturase Location: 4898-5114 bp Feature: domain Description: GIIM Note: maturase Location: 4898-51 1 4 bp Feature: gene Location: 5260-6132 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5293-5941 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5293-5941 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5962-6079 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5962-6079 bp Feature: gene Location: 6231-6692 bp Feature: domain Description: ygfB_yecA Location: 6240-6591 bp Feature: domain Description: ygfB_yecA Location: 6240-6591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ygfB_yecA (TIGR02292)

Seq: NBUH01000068.1 Sinorhizobium medicae strain Str11 scaffold96.1, whole genome shotgun sequence (12480 bp)
Overview 1 RT 1: 670-9337 bp Neighborhood of RT #1 [670, 9366] SUL1 RVT-GII Intron_maturas2 HNHc ArdC DUF736 RVT-GII COG3415 Feature: gene Location: 670-2403 bp Feature: domain Description: SUL1 Location: 772-2368 bp Feature: domain Description: SUL1 Location: 772 -2 368 bp Feature: gene Location: 2507-2776 bp Feature: gene Location: 2794-4710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3061-3898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3061-3898 bp Feature: domain Description: Intron_maturas2 Location: 3979-4267 bp Feature: domain Description: Intron_maturas2 Location: 3979-42 67 bp Feature: domain Description: HNHc Note: nucleases Location: 4432-4591 bp Feature: domain Description: HNHc Note: nucleases Location: 4432 -4591 bp Feature: gene Location: 5204-5413 bp Feature: gene Location: 5485-5865 bp Feature: domain Description: ArdC Location: 5542-5857 bp Feature: domain Description: ArdC Location: 5542 -5857 bp Feature: gene Location: 7472-7714 bp Feature: domain Description: DUF736 Location: 7490-7643 bp Feature: domain Description: DUF736 Location: 7490-7643 bp Feature: gene Location: 7756-7911 bp Feature: gene Location: 8009-8479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8156-8417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8156-8417 bp Feature: gene Location: 8509-8817 bp Feature: gene Location: 8980-9366 bp Feature: domain Description: COG3415 Location: 8989-9337 bp Feature: domain Description: COG3415 Location: 8989-9337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ArdC (COG4227), SUL1 (COG0659), DUF736 (pfam05284), COG3415 (Transposase )