myRT

myRT report for GCA_002865125.1_ASM286512v1

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Seq: NBUJ01000035.1 Sinorhizobium medicae strain Str9 scaffold108.1, whole genome shotgun sequence (3210 bp)
Overview 1 RT 1: 1548-3123 bp Neighborhood of RT #1 [1548, 3209] DUF4096 DDE_3 RVT-GII GIIM Feature: gene Location: 1548-1712 bp Feature: domain Description: DUF4096 Location: 1566-1680 bp Feature: domain Description: DUF4096 Location: 1 566-1 680 bp Feature: gene Location: 2171-2554 bp Feature: domain Description: DDE_3 Location: 2204-2411 bp Feature: domain Description: DDE_3 Location: 2204-241 1 bp Feature: gene Location: 2688-3209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694-2820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694-2820 bp Feature: domain Description: GIIM Note: maturase Location: 2901-3123 bp Feature: domain Description: GIIM Note: maturase Location: 2901 -31 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)

Seq: NBUJ01000111.1 Sinorhizobium medicae strain Str9 scaffold2.1, whole genome shotgun sequence (309549 bp)
Overview 1 RT 1: 105-3110 bp Neighborhood of RT #1 [105, 3110] RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 105-1307 bp Feature: gene Location: 1328-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1331-1499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1331-1499 bp Feature: domain Description: GIIM Note: maturase Location: 1580-1796 bp Feature: domain Description: GIIM Note: maturase Location: 1580-1796 bp Feature: gene Location: 1942-2814 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1975-2623 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1975-2 62 3 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2644-2761 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 644-2 761 bp Feature: gene Location: 2910-3110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: NBUJ01000016.1 Sinorhizobium medicae strain Str9 scaffold78.1, whole genome shotgun sequence (7746 bp)
Overview 1 RT 1: 934-5156 bp Neighborhood of RT #1 [934, 5230] ArdC RVT-GII Intron_maturas2 HNHc Phage_int_SAM_1 INT_RitC_C_like Feature: gene Location: 934-1314 bp Feature: domain Description: ArdC Location: 991-1306 bp Feature: domain Description: ArdC Location: 991-13 06 bp Feature: gene Location: 1386-1736 bp Feature: gene Location: 1979-3895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2246-3083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2246-3 083 bp Feature: domain Description: Intron_maturas2 Location: 3164-3452 bp Feature: domain Description: Intron_maturas2 Location: 3 164-3 452 bp Feature: domain Description: HNHc Note: nucleases Location: 3617-3776 bp Feature: domain Description: HNHc Note: nucleases Location: 3 617-3 776 bp Feature: gene Location: 3967-4122 bp Feature: gene Location: 4238-5230 bp Feature: domain Description: Phage_int_SAM_1 Location: 4280-4523 bp Feature: domain Description: Phage_int_SAM_1 Location: 4280-4523 bp Feature: domain Description: INT_RitC_C_like Location: 4616-5156 bp Feature: domain Description: INT_RitC_C_like Location: 4616-5156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), ArdC (COG4227)