myRT

myRT report for GCA_002865155.1_ASM286515v1

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Seq: NBUL01000030.1 Sinorhizobium medicae strain Str7 scaffold111.1, whole genome shotgun sequence (6924 bp)
Overview 1 RT 1: 2482-6913 bp Neighborhood of RT #1 [2482, 6921] Phage_int_SAM_1 INT_RitC_C_like RVT-GII Intron_maturas2 HNHc ArdC Feature: gene Location: 2482-3474 bp Feature: domain Description: Phage_int_SAM_1 Location: 2524-2767 bp Feature: domain Description: Phage_int_SAM_1 Location: 2524-2767 bp Feature: domain Description: INT_RitC_C_like Location: 2860-3400 bp Feature: domain Description: INT_RitC_C_like Location: 2860-3400 bp Feature: gene Location: 3590-3745 bp Feature: gene Location: 3939-5855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4206-5043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4206-5043 bp Feature: domain Description: Intron_maturas2 Location: 5124-5412 bp Feature: domain Description: Intron_maturas2 Location: 51 24-541 2 bp Feature: domain Description: HNHc Note: nucleases Location: 5577-5736 bp Feature: domain Description: HNHc Note: nucleases Location: 5577-5736 bp Feature: gene Location: 6098-6448 bp Feature: gene Location: 6520-6921 bp Feature: domain Description: ArdC Location: 6598-6913 bp Feature: domain Description: ArdC Location: 6598-691 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ArdC (COG4227)

Seq: NBUL01000292.1 Sinorhizobium medicae strain Str7 scaffold25.1, whole genome shotgun sequence (86815 bp)
Overview 1 RT 1: 679-4159 bp Neighborhood of RT #1 [679, 4476] COG3415 RVT-GII RVT-GII GIIM AraH PBP1_sensor_kinase_like Feature: gene Location: 679-1065 bp Feature: domain Description: COG3415 Location: 688-1036 bp Feature: domain Description: COG3415 Location: 688-1036 bp Feature: gene Location: 1860-2198 bp Feature: gene Location: 2234-3127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2249-2327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 49-2 32 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2393-2738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 393-2 738 bp Feature: domain Description: GIIM Note: maturase Location: 2819-3041 bp Feature: domain Description: GIIM Note: maturase Location: 2 819-3041 bp Feature: gene Location: 3341-3625 bp Feature: domain Description: AraH Location: 3344-3503 bp Feature: domain Description: AraH Location: 3344-3503 bp Feature: gene Location: 3622-4476 bp Feature: domain Description: PBP1_sensor_kinase_like Location: 3730-4159 bp Feature: domain Description: PBP1_sensor_kinase_like Location: 3730-4159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AraH (COG1172), PBP1_sensor_kinase_like, COG3415 (Transposase )

Seq: NBUL01000167.1 Sinorhizobium medicae strain Str7 scaffold8.1, whole genome shotgun sequence (185426 bp)
Overview 1 RT 1: 164797-168494 bp Neighborhood of RT #1 [164797, 168517] ygfB_yecA DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII DDE_Tnp_IS66 Feature: gene Location: 164797-165360 bp Feature: domain Description: ygfB_yecA Location: 164854-165259 bp Feature: domain Description: ygfB_yecA Location: 164854-165259 bp Feature: gene Location: 165357-166229 bp Feature: domain Description: DDE_Tnp_IS66 Location: 165390-166038 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1653 90-16603 8 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 166059-166176 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 166059-166176 bp Feature: gene Location: 166283-166843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166286-166454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166286-166454 bp Feature: domain Description: GIIM Note: maturase Location: 166535-166751 bp Feature: domain Description: GIIM Note: maturase Location: 16653 5-166751 bp Feature: gene Location: 166894-167613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167110-167608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167110-167608 bp Feature: gene Location: 167811-168206 bp Feature: gene Location: 168266-168517 bp Feature: domain Description: DDE_Tnp_IS66 Location: 168272-168494 bp Feature: domain Description: DDE_Tnp_IS66 Location: 168272-168494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ygfB_yecA (TIGR02292), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)