myRT

myRT report for GCA_002865225.1_ASM286522v1

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Seq: NBUP01000083.1 Sinorhizobium medicae strain Str3 scaffold150.1, whole genome shotgun sequence (1475 bp)
Overview 1 RT 1: 107-1387 bp Neighborhood of RT #1 [107, 1473] DDE_3 RVT-GII GIIM Feature: gene Location: 107-238 bp Feature: gene Location: 444-950 bp Feature: domain Description: DDE_3 Location: 588-807 bp Feature: domain Description: DDE_3 Location: 588-807 bp Feature: gene Location: 961-1473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967-1 084 bp Feature: domain Description: GIIM Note: maturase Location: 1165-1387 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 65-1 387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)

Seq: NBUP01000167.1 Sinorhizobium medicae strain Str3 scaffold49.1, whole genome shotgun sequence (31796 bp)
Overview 1 RT 1: 9294-12952 bp 2 RT 2: 22344-28044 bp Neighborhood of RT #1 [9294, 12952] Caa3_CtaG COG3415 RVT-GII RVT-GII DUF736 Neighborhood of RT #2 [22344, 28118] FIDO ArdC RVT-GII Intron_maturas2 HNHc Phage_int_SAM_1 INT_RitC_C_like Feature: gene Location: 9294-10343 bp Feature: domain Description: Caa3_CtaG Location: 9426-10143 bp Feature: domain Description: Caa3_CtaG Location: 942 6-10143 bp Feature: gene Location: 10388-10774 bp Feature: domain Description: COG3415 Location: 10397-10745 bp Feature: domain Description: COG3415 Location: 10397-10745 bp Feature: gene Location: 11458-11823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11674-11758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11674-11758 bp Feature: gene Location: 11805-12053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11808-12036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11808-12 036 bp Feature: gene Location: 12289-12531 bp Feature: domain Description: DUF736 Location: 12307-12460 bp Feature: domain Description: DUF736 Location: 12 307-12 460 bp Feature: gene Location: 12662-12952 bp Feature: gene Location: 22344-23393 bp Feature: domain Description: FIDO Location: 22347-23043 bp Feature: domain Description: FIDO Location: 2 2 347-2 3043 bp Feature: gene Location: 23557-23937 bp Feature: domain Description: ArdC Location: 23614-23929 bp Feature: domain Description: ArdC Location: 2 3614-2 392 9 bp Feature: gene Location: 24741-26657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25008-25845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5008-2 5845 bp Feature: domain Description: Intron_maturas2 Location: 25926-26214 bp Feature: domain Description: Intron_maturas2 Location: 2 592 6-2 62 14 bp Feature: domain Description: HNHc Note: nucleases Location: 26379-26538 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6379-2 6538 bp Feature: gene Location: 26729-26884 bp Feature: gene Location: 27126-28118 bp Feature: domain Description: Phage_int_SAM_1 Location: 27168-27411 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 7168-2 7411 bp Feature: domain Description: INT_RitC_C_like Location: 27504-28044 bp Feature: domain Description: INT_RitC_C_like Location: 2 7504-2 8044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), RVT-GII, DUF736 (pfam05284), Caa3_CtaG (pfam09678), FIDO (COG2184), ArdC (COG4227), Intron_maturas2 (pfam01348), HNHc (smart00507), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182)

Seq: NBUP01000026.1 Sinorhizobium medicae strain Str3 scaffold8.1, whole genome shotgun sequence (200084 bp)
Overview 1 RT 1: 40904-44383 bp Neighborhood of RT #1 [40904, 44484] DDE_Tnp_IS66 RVT-GII RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C ygfB_yecA Feature: gene Location: 40904-41155 bp Feature: domain Description: DDE_Tnp_IS66 Location: 40910-41132 bp Feature: domain Description: DDE_Tnp_IS66 Location: 40910-4113 2 bp Feature: gene Location: 41215-41754 bp Feature: gene Location: 41668-42036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41884-41971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41884-41971 bp Feature: gene Location: 41988-42998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41991-42609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41991-42609 bp Feature: domain Description: GIIM Note: maturase Location: 42690-42906 bp Feature: domain Description: GIIM Note: maturase Location: 42690-42906 bp Feature: gene Location: 43052-43924 bp Feature: domain Description: DDE_Tnp_IS66 Location: 43085-43733 bp Feature: domain Description: DDE_Tnp_IS66 Location: 43 085-43 73 3 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43754-43871 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 43 754-43 871 bp Feature: gene Location: 43921-44484 bp Feature: domain Description: ygfB_yecA Location: 43978-44383 bp Feature: domain Description: ygfB_yecA Location: 43 978-443 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ygfB_yecA (TIGR02292)