myRT

myRT report for GCA_002865265.1_ASM286526v1

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Seq: NBUQ01000200.1 Sinorhizobium medicae strain Str1 scaffold122.1, whole genome shotgun sequence (13426 bp)
Overview 1 RT 1: 651-5621 bp Neighborhood of RT #1 [651, 5641] COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C INT_RitA_C_like INT_RitA_C_like Feature: gene Location: 651-1412 bp Feature: domain Description: COG3436 Location: 900-1377 bp Feature: domain Description: COG3436 Location: 900-1 377 bp Feature: gene Location: 1472-2380 bp Feature: gene Location: 1925-3184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2141-2795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 41 -2795 bp Feature: domain Description: GIIM Note: maturase Location: 2876-3092 bp Feature: domain Description: GIIM Note: maturase Location: 2876-3092 bp Feature: gene Location: 3238-4218 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3271-3919 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3271 -391 9 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3940-4042 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3940-4042 bp Feature: gene Location: 4337-5641 bp Feature: domain Description: INT_RitA_C_like Location: 5033-5300 bp Feature: domain Description: INT_RitA_C_like Location: 5033-5300 bp Feature: domain Description: INT_RitA_C_like Location: 5306-5621 bp Feature: domain Description: INT_RitA_C_like Location: 5306-5621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), INT_RitA_C_like (cd01188), COG3436 (Transposase )

Seq: NBUQ01000076.1 Sinorhizobium medicae strain Str1 scaffold2.1, whole genome shotgun sequence (388440 bp)
Overview 1 RT 1: 138461-143216 bp Neighborhood of RT #1 [138461, 143317] group_II_RT_mat RVT-CRISPR-like HTH_17 XerC Feature: gene Location: 138461-138946 bp Feature: gene Location: 139135-139638 bp Feature: gene Location: 140040-141725 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 140760-140898 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 140760-140898 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 141060-141237 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 141060-1412 37 bp Feature: gene Location: 141712-142146 bp Feature: domain Description: HTH_17 Location: 141832-141961 bp Feature: domain Description: HTH_17 Location: 141832 -141961 bp Feature: gene Location: 142121-143317 bp Feature: domain Description: XerC Location: 142373-143216 bp Feature: domain Description: XerC Location: 142 373-1432 16 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-CRISPR, HTH_17 (pfam12728), XerC (COG4973)

Seq: NBUQ01000055.1 Sinorhizobium medicae strain Str1 scaffold82.1, whole genome shotgun sequence (17659 bp)
Overview 1 RT 1: 14429-17619 bp Neighborhood of RT #1 [14429, 17619] ArdC RVT-GII RVT-GII Intron_maturas2 HNHc Feature: gene Location: 14429-14803 bp Feature: domain Description: ArdC Location: 14450-14792 bp Feature: domain Description: ArdC Location: 14450-14792 bp Feature: gene Location: 14824-15174 bp Feature: gene Location: 15417-16181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15684-16122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15684-16122 bp Feature: gene Location: 16178-17332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16325-16520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 25-16520 bp Feature: domain Description: Intron_maturas2 Location: 16601-16889 bp Feature: domain Description: Intron_maturas2 Location: 16601-16889 bp Feature: domain Description: HNHc Note: nucleases Location: 17054-17213 bp Feature: domain Description: HNHc Note: nucleases Location: 17054-17213 bp Feature: gene Location: 17350-17619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NBUQ01000031.1 Sinorhizobium medicae strain Str1 scaffold91.1, whole genome shotgun sequence (15371 bp)
Overview 1 RT 1: 8222-11682 bp Neighborhood of RT #1 [8222, 11682] InsE RVT-GII RVT-GII GIIM DDE_3 Feature: gene Location: 8222-8626 bp Feature: domain Description: InsE Location: 8267-8441 bp Feature: domain Description: InsE Location: 8267-84 4 1 bp Feature: gene Location: 8674-8805 bp Feature: gene Location: 9379-9918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9595-9862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9595-9862 bp Feature: gene Location: 9987-10709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9993-10320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9993-10320 bp Feature: domain Description: GIIM Note: maturase Location: 10401-10623 bp Feature: domain Description: GIIM Note: maturase Location: 104 01-10623 bp Feature: gene Location: 10834-11349 bp Feature: domain Description: DDE_3 Location: 10864-11236 bp Feature: domain Description: DDE_3 Location: 10864 -11236 bp Feature: gene Location: 11437-11682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), InsE (COG2963), RVT-GII, GIIM (pfam08388)