myRT

myRT report for GCA_002865305.1_ASM286530v1

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Seq: NIHU01000017.1 [Ruminococcus] gnavus strain RJX1126 RJX1126_17, whole genome shotgun sequence (77555 bp)
Overview 1 RT 1: 61269-64069 bp Neighborhood of RT #1 [61269, 64069] Avd_like RVT-DGRs Feature: gene Location: 61269-61652 bp Feature: domain Description: Avd_like Location: 61323-61644 bp Feature: domain Description: Avd_like Location: 61 323-61 644 bp Feature: gene Location: 61774-61998 bp Feature: gene Location: 62005-63144 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62242-62908 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62242-62908 bp Feature: gene Location: 63175-63735 bp Feature: gene Location: 63749-64069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: NIHU01000024.1 [Ruminococcus] gnavus strain RJX1126 RJX1126_24, whole genome shotgun sequence (53347 bp)
Overview 1 RT 1: 4981-8359 bp Neighborhood of RT #1 [4981, 9741] RVT-DGRs 7tmA_mAChR_GAR-2-like Feature: gene Location: 4981-5172 bp Feature: gene Location: 5165-5311 bp Feature: gene Location: 5591-6862 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5891-6551 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5891-6551 bp Feature: gene Location: 7025-7174 bp Feature: gene Location: 7372-9741 bp Feature: domain Description: 7tmA_mAChR_GAR-2-like Location: 7837-8359 bp Feature: domain Description: 7tmA_mAChR_GAR-2 -like Location: 7837-8359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, 7tmA_mAChR_GAR-2-like (cd15302)

Seq: NIHU01000030.1 [Ruminococcus] gnavus strain RJX1126 RJX1126_30, whole genome shotgun sequence (17462 bp)
Overview 1 RT 1: 13427-17103 bp Neighborhood of RT #1 [13427, 17103] Maff2 T4SS-DNA_transf RVT-GII Feature: gene Location: 13427-13588 bp Feature: domain Description: Maff2 Location: 13430-13580 bp Feature: domain Description: Maff2 Location: 13 43 0-13 580 bp Feature: gene Location: 13865-15274 bp Feature: domain Description: T4SS-DNA_transf Location: 14060-15104 bp Feature: domain Description: T4SS-DNA_transf Location: 14060-15104 bp Feature: gene Location: 15297-16763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15300-15933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 00-1593 3 bp Feature: gene Location: 16903-17103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), T4SS-DNA_transf (pfam02534), RVT-GII

Seq: NIHU01000007.1 [Ruminococcus] gnavus strain RJX1126 RJX1126_7, whole genome shotgun sequence (142821 bp)
Overview 1 RT 1: 45620-49587 bp 2 RT 2: 62548-65982 bp Neighborhood of RT #1 [45620, 49587] HTH_32 RVT-GII Intron_maturas2 Neighborhood of RT #2 [62548, 65982] Phage_XkdX RVT-DGRs Feature: gene Location: 45620-46072 bp Feature: domain Description: HTH_32 Location: 45641-45809 bp Feature: domain Description: HTH_32 Location: 4 564 1-4 5809 bp Feature: gene Location: 46097-46849 bp Feature: gene Location: 46728-48344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46992-47823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6992-4 7823 bp Feature: domain Description: Intron_maturas2 Location: 47895-48210 bp Feature: domain Description: Intron_maturas2 Location: 4 7895-4 8210 bp Feature: gene Location: 48346-48804 bp Feature: gene Location: 48919-49587 bp Feature: gene Location: 62548-62700 bp Feature: domain Description: Phage_XkdX Location: 62569-62680 bp Feature: domain Description: Phage_XkdX Location: 62569-62680 bp Feature: gene Location: 62702-63028 bp Feature: gene Location: 62937-64322 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63150-63894 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63150-63894 bp Feature: gene Location: 64429-64593 bp Feature: gene Location: 64687-65982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, Intron_maturas2 (pfam01348), Phage_XkdX (pfam09693), RVT-DGRs

Seq: NIHU01000008.1 [Ruminococcus] gnavus strain RJX1126 RJX1126_8, whole genome shotgun sequence (142540 bp)
Overview 1 RT 1: 6027-9747 bp 2 RT 2: 12291-17240 bp Neighborhood of RT #1 [6027, 9747] DUF3847 Ssb RVT-GII GIIM Neighborhood of RT #2 [12291, 17299] HTH_32 rve pepcterm_ATPase RVT-GII COG3666 DDE_Tnp_1_6 Feature: gene Location: 6027-6542 bp Feature: domain Description: DUF3847 Location: 6171-6408 bp Feature: domain Description: DUF3847 Location: 6171-6408 bp Feature: gene Location: 6652-7056 bp Feature: domain Description: Ssb Location: 6655-6997 bp Feature: domain Description: Ssb Location: 665 5 -6997 bp Feature: gene Location: 7333-8724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7648-8272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7648-8272 bp Feature: domain Description: GIIM Note: maturase Location: 8329-8545 bp Feature: domain Description: GIIM Note: maturase Location: 8329-85 45 bp Feature: gene Location: 8762-8917 bp Feature: gene Location: 9316-9747 bp Feature: gene Location: 12291-13544 bp Feature: domain Description: HTH_32 Location: 12471-12699 bp Feature: domain Description: HTH_32 Location: 12471-12699 bp Feature: domain Description: rve Location: 12765-13122 bp Feature: domain Description: rve Location: 12765 -13122 bp Feature: gene Location: 13526-14350 bp Feature: domain Description: pepcterm_ATPase Location: 13556-14339 bp Feature: domain Description: pepcterm_ATPase Location: 135 5 6-14339 bp Feature: gene Location: 14435-14896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14639-14816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14639-14816 bp Feature: gene Location: 14995-15378 bp Feature: gene Location: 15497-17299 bp Feature: domain Description: COG3666 Location: 15626-16034 bp Feature: domain Description: COG3666 Location: 15 626-16034 bp Feature: domain Description: DDE_Tnp_1_6 Location: 16847-17240 bp Feature: domain Description: DDE_Tnp_1_6 Location: 16847-17240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3847 (pfam12958), Ssb (COG0629), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), rve (pfam00665), pepcterm_ATPase (TIGR03015), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)