myRT

myRT report for GCA_002865325.1_ASM286532v1

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Seq: NIHS01000014.1 [Ruminococcus] gnavus strain RJX1124 RJX1124_14, whole genome shotgun sequence (82659 bp)
Overview 1 RT 1: 205-5319 bp Neighborhood of RT #1 [205, 5372] RVT-GII ApbE PLDc_2 PLDc_ymdC_like_2 Feature: gene Location: 205-849 bp Feature: gene Location: 982-1227 bp Feature: gene Location: 1317-2612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1572-2262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 572-2262 bp Feature: gene Location: 2827-3867 bp Feature: domain Description: ApbE Location: 2935-3853 bp Feature: domain Description: ApbE Location: 2935-3853 bp Feature: gene Location: 3939-5372 bp Feature: domain Description: PLDc_2 Location: 4182-4623 bp Feature: domain Description: PLDc_2 Location: 41 82-4623 bp Feature: domain Description: PLDc_ymdC_like_2 Location: 4815-5319 bp Feature: domain Description: PLDc_ymdC_like_2 Location: 481 5-531 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ApbE (pfam02424), PLDc_2 (pfam13091), PLDc_ymdC_like_2 (cd09113)

Seq: NIHS01000021.1 [Ruminococcus] gnavus strain RJX1124 RJX1124_21, whole genome shotgun sequence (52272 bp)
Overview 1 RT 1: 9451-14271 bp Neighborhood of RT #1 [9451, 14330] Maff2 VirD4 RVT-GII VirD4 Feature: gene Location: 9451-9666 bp Feature: domain Description: Maff2 Location: 9454-9661 bp Feature: domain Description: Maff2 Location: 9454-9661 bp Feature: gene Location: 9873-11054 bp Feature: domain Description: VirD4 Location: 9936-10947 bp Feature: domain Description: VirD4 Location: 9936-10947 bp Feature: gene Location: 11151-13028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11469-12213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11469-12 2 13 bp Feature: gene Location: 13180-13500 bp Feature: gene Location: 13650-14330 bp Feature: domain Description: VirD4 Location: 13908-14271 bp Feature: domain Description: VirD4 Location: 13908-142 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VirD4 (COG3505), Maff2 (pfam12750)

Seq: NIHS01000005.1 [Ruminococcus] gnavus strain RJX1124 RJX1124_5, whole genome shotgun sequence (152003 bp)
Overview 1 RT 1: 124216-130464 bp Neighborhood of RT #1 [124216, 130464] DUF3801 VirD4 RVT-GII Intron_maturas2 Feature: gene Location: 124216-125379 bp Feature: domain Description: DUF3801 Location: 124315-125335 bp Feature: domain Description: DUF3 801 Location: 1243 15-1253 3 5 bp Feature: gene Location: 125422-126795 bp Feature: domain Description: VirD4 Location: 125578-126766 bp Feature: domain Description: VirD4 Location: 125578-126766 bp Feature: gene Location: 127381-129168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127615-128449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127615-128449 bp Feature: domain Description: Intron_maturas2 Location: 128527-128830 bp Feature: domain Description: Intron_maturas2 Location: 128527-12883 0 bp Feature: gene Location: 129432-130013 bp Feature: gene Location: 130126-130464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348)

Seq: NIHS01000049.1 [Ruminococcus] gnavus strain RJX1124 RJX1124_51, whole genome shotgun sequence (12840 bp)
Overview 1 RT 1: 10400-12767 bp Neighborhood of RT #1 [10400, 12796] FtsK_SpoIIIE RVT-GII Feature: gene Location: 10400-11254 bp Feature: domain Description: FtsK_SpoIIIE Location: 11060-11192 bp Feature: domain Description: FtsK_SpoIIIE Location: 11060-11192 bp Feature: gene Location: 11530-11673 bp Feature: gene Location: 11918-12796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12218-12767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12218-12767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK_SpoIIIE (pfam01580), RVT-GII

Seq: NIHS01000052.1 [Ruminococcus] gnavus strain RJX1124 RJX1124_54, whole genome shotgun sequence (11073 bp)
Overview 1 RT 1: 8521-11000 bp Neighborhood of RT #1 [8521, 11029] Lysozyme_like Spr RVT-GII Feature: gene Location: 8521-9453 bp Feature: domain Description: Lysozyme_like Location: 8668-9130 bp Feature: domain Description: Lysozyme_like Location: 8668-9130 bp Feature: domain Description: Spr Location: 9151-9442 bp Feature: domain Description: Spr Location: 915 1-9442 bp Feature: gene Location: 9613-9867 bp Feature: gene Location: 10073-11029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10340-11000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10340-11000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Lysozyme_like (pfam13702), Spr (COG0791)

Seq: NIHS01000058.1 [Ruminococcus] gnavus strain RJX1124 RJX1124_60, whole genome shotgun sequence (8250 bp)
Overview 1 RT 1: 2-1470 bp Neighborhood of RT #1 [2, 1487] RVT-GII trans_reg_C Feature: gene Location: 2-655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317-587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317-587 bp Feature: gene Location: 701-844 bp Feature: gene Location: 1134-1487 bp Feature: domain Description: trans_reg_C Location: 1206-1470 bp Feature: domain Description: trans_reg_C Location: 1206 -1470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), RVT-GII

Seq: NIHS01000059.1 [Ruminococcus] gnavus strain RJX1124 RJX1124_61, whole genome shotgun sequence (8055 bp)
Overview 1 RT 1: 119-3246 bp Neighborhood of RT #1 [119, 3347] RVT-GII PurR COG5421 Feature: gene Location: 119-700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122-446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122-446 bp Feature: gene Location: 1202-2203 bp Feature: domain Description: PurR Location: 1208-2201 bp Feature: domain Description: PurR Location: 1208-2201 bp Feature: gene Location: 2451-3347 bp Feature: domain Description: COG5421 Location: 3048-3246 bp Feature: domain Description: COG5421 Location: 3048-3246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PurR (COG1609), COG5421 (Transposase )

Seq: NIHS01000071.1 [Ruminococcus] gnavus strain RJX1124 RJX1124_74, whole genome shotgun sequence (2882 bp)
Overview 1 RT 1: 3-2796 bp Neighborhood of RT #1 [3, 2879] RVT-GII Rol_Rep_N Rep_trans Feature: gene Location: 3-1136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-1074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336-1074 bp Feature: gene Location: 2025-2879 bp Feature: domain Description: Rol_Rep_N Location: 2031-2157 bp Feature: domain Description: Rol_Rep_N Location: 2031-2157 bp Feature: domain Description: Rep_trans Location: 2181-2796 bp Feature: domain Description: Rep_trans Location: 218 1-2796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII

Seq: NIHS01000083.1 [Ruminococcus] gnavus strain RJX1124 RJX1124_87, whole genome shotgun sequence (1870 bp)
Overview 1 RT 1: 79-1249 bp Neighborhood of RT #1 [79, 1323] RVT-GII GIIM Feature: gene Location: 79-1323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-9 40 bp Feature: domain Description: GIIM Note: maturase Location: 1021-1249 bp Feature: domain Description: GIIM Note: maturase Location: 1021-1249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)