myRT

myRT report for GCA_002865345.1_ASM286534v1

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Seq: NIHT01000015.1 [Ruminococcus] gnavus strain RJX1125 RJX1125_15, whole genome shotgun sequence (89296 bp)
Overview 1 RT 1: 86431-89215 bp Neighborhood of RT #1 [86431, 89295] COG3666 DDE_Tnp_1_6 RVT-GII Feature: gene Location: 86431-88233 bp Feature: domain Description: COG3666 Location: 86560-86968 bp Feature: domain Description: COG3666 Location: 86560-86968 bp Feature: domain Description: DDE_Tnp_1_6 Location: 87781-88174 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 87781 -881 74 bp Feature: gene Location: 88352-88735 bp Feature: gene Location: 88834-89295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89038-89215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89038-8921 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII

Seq: NIHT01000040.1 [Ruminococcus] gnavus strain RJX1125 RJX1125_40, whole genome shotgun sequence (10910 bp)
Overview 1 RT 1: 5373-9093 bp Neighborhood of RT #1 [5373, 9093] DUF3847 Ssb RVT-GII GIIM Feature: gene Location: 5373-6044 bp Feature: domain Description: DUF3847 Location: 5673-5910 bp Feature: domain Description: DUF3847 Location: 5673-5910 bp Feature: gene Location: 5998-6402 bp Feature: domain Description: Ssb Location: 6001-6340 bp Feature: domain Description: Ssb Location: 6001-6340 bp Feature: gene Location: 6679-8070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6994-7618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6994-7618 bp Feature: domain Description: GIIM Note: maturase Location: 7675-7891 bp Feature: domain Description: GIIM Note: maturase Location: 7675-7891 bp Feature: gene Location: 8108-8263 bp Feature: gene Location: 8662-9093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3847 (pfam12958), Ssb (COG0629), RVT-GII, GIIM (pfam08388)

Seq: NIHT01000006.1 [Ruminococcus] gnavus strain RJX1125 RJX1125_6, whole genome shotgun sequence (151889 bp)
Overview 1 RT 1: 30541-34898 bp Neighborhood of RT #1 [30541, 34898] RVT-DGRs Smc Feature: gene Location: 30541-30669 bp Feature: gene Location: 30691-30960 bp Feature: gene Location: 30948-32021 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31152-31764 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 1152-3 1764 bp Feature: gene Location: 32408-34489 bp Feature: domain Description: Smc Location: 32420-33212 bp Feature: domain Description: Smc Location: 3 2420-3 3 212 bp Feature: gene Location: 34734-34898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Smc (COG1196)

Seq: NIHT01000008.1 [Ruminococcus] gnavus strain RJX1125 RJX1125_8, whole genome shotgun sequence (139914 bp)
Overview 1 RT 1: 83400-89604 bp Neighborhood of RT #1 [83400, 89648] PRK13876 RVT-GII Intron_maturas2 VirD4 DUF3801 Feature: gene Location: 83400-83738 bp Feature: gene Location: 83851-84450 bp Feature: domain Description: PRK13876 Location: 83863-84268 bp Feature: domain Description: PRK13876 Location: 83863-84 268 bp Feature: gene Location: 84696-86528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84975-85809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 975-85809 bp Feature: domain Description: Intron_maturas2 Location: 85887-86190 bp Feature: domain Description: Intron_maturas2 Location: 85887-86190 bp Feature: gene Location: 87069-88442 bp Feature: domain Description: VirD4 Location: 87225-88413 bp Feature: domain Description: VirD4 Location: 87225-884 13 bp Feature: gene Location: 88485-89648 bp Feature: domain Description: DUF3801 Location: 88584-89604 bp Feature: domain Description: DUF3801 Location: 88584 -89604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13876 (conjugal transfer coupling protein TraG; Provisional), RVT-GII, Intron_maturas2 (pfam01348), VirD4 (COG3505), DUF3801 (pfam12687)