myRT

myRT report for GCA_002866205.1_ASM286620v1

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Seq: LTCG01000051.1 Streptococcus pneumoniae strain NTPn 90 NTPn_90_contig_144, whole genome shotgun sequence (10229 bp)
Overview 1 RT 1: 206-5430 bp Neighborhood of RT #1 [206, 5447] xerS RVT-GII GIIM Lip_prot_lig_C AceF lipoamide_DH Feature: gene Location: 206-1276 bp Feature: domain Description: xerS Location: 209-1274 bp Feature: domain Description: xerS Location: 209-1 274 bp Feature: gene Location: 1308-1532 bp Feature: gene Location: 1977-3155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2181-2796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 81 -2796 bp Feature: domain Description: GIIM Note: maturase Location: 2850-3063 bp Feature: domain Description: GIIM Note: maturase Location: 2850-3063 bp Feature: gene Location: 3320-3673 bp Feature: domain Description: Lip_prot_lig_C Location: 3413-3659 bp Feature: domain Description: Lip_prot_lig_C Location: 341 3-3659 bp Feature: gene Location: 3744-5447 bp Feature: domain Description: AceF Location: 3747-4044 bp Feature: domain Description: AceF Location: 3747-4044 bp Feature: domain Description: lipoamide_DH Location: 4080-5430 bp Feature: domain Description: lipoamide_DH Location: 4080-5430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), xerS (PRK05084), AceF (COG0508), lipoamide_DH (TIGR01350)

Seq: LTCG01000079.1 Streptococcus pneumoniae strain NTPn 90 NTPn_90_contig_17, whole genome shotgun sequence (17931 bp)
Overview 1 RT 1: 13501-17035 bp Neighborhood of RT #1 [13501, 17205] COG5340 AbiEii RVT-GII cas_Csn1 Feature: gene Location: 13501-14091 bp Feature: domain Description: COG5340 Location: 13504-13936 bp Feature: domain Description: COG5340 Location: 13504-13936 bp Feature: gene Location: 14088-14933 bp Feature: domain Description: AbiEii Location: 14187-14886 bp Feature: domain Description: AbiEii Location: 14187-14886 bp Feature: gene Location: 15283-17205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15610-16345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15610-16345 bp Feature: domain Description: cas_Csn1 Location: 16756-17035 bp Feature: domain Description: cas_Csn1 Location: 16756-17035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865)