myRT

myRT report for GCA_002866805.1_ASM286680v1

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Seq: NIZS01000032.1 Pseudomonas aeruginosa strain PA6 NODE_32_length_82525_cov_33.6788, whole genome shotgun sequence (82525 bp)
Overview 1 RT 1: 2845-7141 bp Neighborhood of RT #1 [2845, 7224] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 2845-3024 bp Feature: gene Location: 3208-3606 bp Feature: gene Location: 3756-5024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3969-4626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3969-4626 bp Feature: domain Description: GIIM Note: maturase Location: 4704-4926 bp Feature: domain Description: GIIM Note: maturase Location: 4704-4926 bp Feature: gene Location: 5413-6054 bp Feature: domain Description: DUF772 Location: 5563-5758 bp Feature: domain Description: DUF772 Location: 5563-5758 bp Feature: gene Location: 6397-7224 bp Feature: domain Description: ABC_phnC Location: 6427-7141 bp Feature: domain Description: ABC_phnC Location: 6427-71 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: NIZS01000004.1 Pseudomonas aeruginosa strain PA6 NODE_4_length_258624_cov_35.2018, whole genome shotgun sequence (258624 bp)
Overview 1 RT 1: 194318-204626 bp Neighborhood of RT #1 [194318, 204628] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 194318-195439 bp Feature: domain Description: COG3177 Location: 194336-195428 bp Feature: domain Description: COG3177 Location: 194336-19542 8 bp Feature: gene Location: 195701-195862 bp Feature: gene Location: 196165-197850 bp Feature: RT Description: RVT_N Location: 196222-196462 bp Feature: RT Description: RVT_N Location: 1962 2 2 -196462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196510-197146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196510-197146 bp Feature: domain Description: GIIM Note: maturase Location: 197200-197431 bp Feature: domain Description: GIIM Note: maturase Location: 1972 00-197431 bp Feature: domain Description: HNH Note: nucleases Location: 197683-197821 bp Feature: domain Description: HNH Note: nucleases Location: 197683-19782 1 bp Feature: gene Location: 198931-202668 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199039-199696 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 199039-199696 bp Feature: domain Description: PRK09776 Location: 199909-200380 bp Feature: domain Description: PRK09776 Location: 199909-2 00380 bp Feature: domain Description: PAS Location: 200425-200962 bp Feature: domain Description: PAS Location: 2 0042 5-2 00962 bp Feature: domain Description: PRK10060 Location: 200971-202618 bp Feature: domain Description: PRK10060 Location: 2 00971-2 02 618 bp Feature: gene Location: 202775-204628 bp Feature: domain Description: PRK05658 Location: 202787-204626 bp Feature: domain Description: PRK05658 Location: 2 02 787-2 0462 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)