myRT

myRT report for GCA_002870825.1_ASM287082v1

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Seq: NQMD01001560.1 Fischerella thermalis CCMEE 5196 NODE_1883_length_4239_cov_10.782732, whole genome shotgun sequence (4269 bp)
Overview 1 RT 1: 3-3863 bp Neighborhood of RT #1 [3, 3863] RVT_N RVT-GII GIIM McrA Feature: gene Location: 3-173 bp Feature: gene Location: 294-875 bp Feature: gene Location: 1371-3227 bp Feature: domain Description: RVT_N Location: 1518-1764 bp Feature: domain Description: RVT_N Location: 1 51 8-1 764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1806-2484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 806-2484 bp Feature: domain Description: GIIM Note: maturase Location: 2586-2817 bp Feature: domain Description: GIIM Note: maturase Location: 2586-281 7 bp Feature: domain Description: McrA Location: 2901-3168 bp Feature: domain Description: McrA Location: 2901 -31 68 bp Feature: gene Location: 3255-3434 bp Feature: gene Location: 3528-3863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: NQMD01001657.1 Fischerella thermalis CCMEE 5196 NODE_2035_length_2023_cov_11.685122, whole genome shotgun sequence (2053 bp)
Overview 1 RT 1: 3-1980 bp Neighborhood of RT #1 [3, 2009] RVT-CRISPR cas1 Feature: gene Location: 3-2009 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 177-783 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 177-783 bp Feature: domain Description: cas1 Location: 999-1980 bp Feature: domain Description: cas1 Location: 999-1980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1 (TIGR00287)

Seq: NQMD01000346.1 Fischerella thermalis CCMEE 5196 NODE_382_length_1043_cov_12.653883, whole genome shotgun sequence (1073 bp)
Overview 1 RT 1: 40-1023 bp Neighborhood of RT #1 [40, 1070] RVT-GII InsQ Feature: gene Location: 40-210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52-148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52-148 bp Feature: gene Location: 403-708 bp Feature: gene Location: 768-1070 bp Feature: domain Description: InsQ Location: 795-1023 bp Feature: domain Description: InsQ Location: 795-1023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsQ (COG0675)

Seq: NQMD01000407.1 Fischerella thermalis CCMEE 5196 NODE_450_length_1651_cov_10.252574, whole genome shotgun sequence (1681 bp)
Overview 1 RT 1: 22-1036 bp Neighborhood of RT #1 [22, 1092] RVT_N RVT-GII KOG4768 Feature: gene Location: 22-1092 bp Feature: domain Description: RVT_N Location: 58-298 bp Feature: domain Description: RVT_N Location: 58-298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-784 bp Feature: domain Description: KOG4768 Location: 784-1036 bp Feature: domain Description: KOG4 768 Location: 784 -1036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )