myRT

myRT report for GCA_002873075.1_ASM287307v1

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Seq: MCVM01000002.1 Vibrio lentus strain 10N.286.46.E8 10N.286.46.E8_contig_1, whole genome shotgun sequence (864146 bp)
Overview 1 RT 1: 139941-145013 bp 2 RT 2: 462749-473631 bp Neighborhood of RT #1 [139941, 145633] HTH_XRE RVT-Retrons REC Neighborhood of RT #2 [462749, 473631] Mrr_cat zf-C4_Topoisom dnaG RVT-UG2 Feature: gene Location: 139941-140483 bp Feature: gene Location: 140585-140797 bp Feature: domain Description: HTH_XRE Location: 140612-140783 bp Feature: domain Description: HTH_XRE Location: 1 4061 2-1 40783 bp Feature: gene Location: 141087-143510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 141273-141924 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 41 273-1 41 924 bp Feature: gene Location: 143514-143882 bp Feature: gene Location: 143882-145633 bp Feature: domain Description: REC Location: 144788-145013 bp Feature: domain Description: REC Location: 1 44788-1 4501 3 bp Feature: gene Location: 462749-463570 bp Feature: domain Description: Mrr_cat Location: 463049-463379 bp Feature: domain Description: Mrr_cat Location: 463049-463379 bp Feature: domain Description: zf-C4_Topoisom Location: 463451-463562 bp Feature: domain Description: zf-C4_Topoisom Location: 463451 -463562 bp Feature: gene Location: 464046-464771 bp Feature: gene Location: 465132-472562 bp Feature: domain Description: dnaG Location: 465144-466302 bp Feature: domain Description: dnaG Location: 4651 44-466302 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 467007-467628 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 467007-467628 bp Feature: gene Location: 472555-473421 bp Feature: gene Location: 473434-473631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, REC (smart00448), Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396), dnaG (TIGR01391), RVT-UG2

Seq: MCVM01000030.1 Vibrio lentus strain 10N.286.46.E8 10N.286.46.E8_contig_35, whole genome shotgun sequence (15116 bp)
Overview 1 RT 1: 124-10288 bp Neighborhood of RT #1 [124, 10290] RVT_N RVT-GII GIIM TraD_Ftype TraI_TIGR Feature: gene Location: 124-267 bp Feature: gene Location: 502-1974 bp Feature: domain Description: RVT_N Location: 550-793 bp Feature: domain Description: RVT_N Location: 550-793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1465 bp Feature: domain Description: GIIM Note: maturase Location: 1525-1750 bp Feature: domain Description: GIIM Note: maturase Location: 152 5-1750 bp Feature: gene Location: 2283-4322 bp Feature: domain Description: TraD_Ftype Location: 2295-4011 bp Feature: domain Description: TraD_Ftype Location: 2 2 95-4011 bp Feature: gene Location: 4507-10290 bp Feature: domain Description: TraI_TIGR Location: 4510-10288 bp Feature: domain Description: TraI_TIGR Location: 4510-102 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraD_Ftype (TIGR02759), TraI_TIGR (TIGR02760)

Seq: MCVM01000035.1 Vibrio lentus strain 10N.286.46.E8 10N.286.46.E8_contig_4, whole genome shotgun sequence (18365 bp)
Overview 1 RT 1: 11590-17047 bp Neighborhood of RT #1 [11590, 17058] trans_reg_C Avd_like RVT-DGRs Big_1 Big_1 DUF1566 Feature: gene Location: 11590-11883 bp Feature: domain Description: trans_reg_C Location: 11653-11872 bp Feature: domain Description: trans_reg_C Location: 11653 -11872 bp Feature: gene Location: 11915-12289 bp Feature: domain Description: Avd_like Location: 11945-12275 bp Feature: domain Description: Avd_like Location: 11945-12275 bp Feature: gene Location: 12269-13525 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12476-13178 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12476-13 178 bp Feature: gene Location: 13887-14378 bp Feature: gene Location: 14467-17058 bp Feature: domain Description: Big_1 Location: 16048-16177 bp Feature: domain Description: Big_1 Location: 16048-16177 bp Feature: domain Description: Big_1 Location: 16285-16468 bp Feature: domain Description: Big_1 Location: 16285-16468 bp Feature: domain Description: DUF1566 Location: 16795-17047 bp Feature: domain Description: DUF1566 Location: 16795-17047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), Avd_like (cd16376), RVT-DGRs, Big_1 (pfam02369), DUF1566 (pfam07603)