myRT

myRT report for GCA_002873235.1_ASM287323v1

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Seq: MCVE01000009.1 Vibrio cyclitrophicus strain 10N.286.48.E2 10N.286.48.E2_contig_16, whole genome shotgun sequence (254610 bp)
Overview 1 RT 1: 242815-249079 bp Neighborhood of RT #1 [242815, 249081] PriC RoxA RVT-GII GIIM PDC1_MCP_like Tar Feature: gene Location: 242815-243363 bp Feature: domain Description: PriC Location: 242830-243334 bp Feature: domain Description: PriC Location: 242830-243334 bp Feature: gene Location: 243581-244714 bp Feature: domain Description: RoxA Location: 243587-244712 bp Feature: domain Description: RoxA Location: 243587-24471 2 bp Feature: gene Location: 244845-246128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245058-245679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245058-245679 bp Feature: domain Description: GIIM Note: maturase Location: 245724-245943 bp Feature: domain Description: GIIM Note: maturase Location: 245724-245943 bp Feature: gene Location: 246720-246923 bp Feature: gene Location: 246964-249081 bp Feature: domain Description: PDC1_MCP_like Location: 247216-247666 bp Feature: domain Description: PDC1 _MCP_like Location: 24721 6-247666 bp Feature: domain Description: Tar Location: 247945-249079 bp Feature: domain Description: Tar Location: 247945-249079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PriC (pfam07445), RoxA (COG2850), RVT-GII, GIIM (pfam08388), PDC1_MCP_like (cd12913), Tar (COG0840)

Seq: MCVE01000034.1 Vibrio cyclitrophicus strain 10N.286.48.E2 10N.286.48.E2_contig_39, whole genome shotgun sequence (95294 bp)
Overview 1 RT 1: 90349-93348 bp Neighborhood of RT #1 [90349, 93348] RVT-GII GIIM RVT_N Feature: gene Location: 90349-91161 bp Feature: gene Location: 91221-91466 bp Feature: gene Location: 91514-92716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91580-92207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91580-92 2 07 bp Feature: domain Description: GIIM Note: maturase Location: 92276-92492 bp Feature: domain Description: GIIM Note: maturase Location: 92 2 76-92 492 bp Feature: gene Location: 92749-93129 bp Feature: domain Description: RVT_N Location: 92956-93121 bp Feature: domain Description: RVT_N Location: 92 956-9312 1 bp Feature: gene Location: 93205-93348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: MCVE01000035.1 Vibrio cyclitrophicus strain 10N.286.48.E2 10N.286.48.E2_contig_4, whole genome shotgun sequence (352452 bp)
Overview 1 RT 1: 345249-351975 bp Neighborhood of RT #1 [345249, 352451] pheT RVT-UG8 RVT-UG3 Feature: gene Location: 345249-347654 bp Feature: domain Description: pheT Location: 345252-347652 bp Feature: domain Description: pheT Location: 3 45252-3 47652 bp Feature: gene Location: 347881-348900 bp Feature: gene Location: 349538-351490 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 350042-350492 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3 50042-3 50492 bp Feature: gene Location: 351480-352451 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 351501-351975 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3 51501-3 51975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pheT (PRK09616), RVT-UG8, RVT-UG3

Seq: MCVE01000040.1 Vibrio cyclitrophicus strain 10N.286.48.E2 10N.286.48.E2_contig_44, whole genome shotgun sequence (2797 bp)
Overview 1 RT 1: 11-2768 bp Neighborhood of RT #1 [11, 2794] YhhI RVT-GII GIIM YhhI YhhI Feature: gene Location: 11-223 bp Feature: domain Description: YhhI Location: 17-143 bp Feature: domain Description: YhhI Location: 17-14 3 bp Feature: gene Location: 306-1631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585-1242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585-124 2 bp Feature: domain Description: GIIM Note: maturase Location: 1323-1545 bp Feature: domain Description: GIIM Note: maturase Location: 1323-154 5 bp Feature: gene Location: 1716-1913 bp Feature: gene Location: 2090-2794 bp Feature: domain Description: YhhI Location: 2273-2573 bp Feature: domain Description: YhhI Location: 2273-2573 bp Feature: domain Description: YhhI Location: 2663-2768 bp Feature: domain Description: YhhI Location: 2663-2768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)