myRT

myRT report for GCA_002873615.1_ASM287361v1

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Seq: MCUF01000025.1 Shewanella sp. 10N.286.51.B7 10N.286.51.B7_contig_23, whole genome shotgun sequence (128573 bp)
Overview 1 RT 1: 119999-127774 bp Neighborhood of RT #1 [119999, 127845] PBP2_HisK quinone_pig3 RVT_N RVT-GII GIIM COG3367 PLPDE_III_AR_like_1 Feature: gene Location: 119999-120784 bp Feature: domain Description: PBP2_HisK Location: 120146-120752 bp Feature: domain Description: PBP2_HisK Location: 1 201 46-1 20752 bp Feature: gene Location: 121941-122921 bp Feature: domain Description: quinone_pig3 Location: 121944-122913 bp Feature: domain Description: quinone_pig3 Location: 1 21 944-1 2291 3 bp Feature: gene Location: 123168-124673 bp Feature: RT Description: RVT_N Location: 123258-123501 bp Feature: RT Description: RVT_N Location: 1 23258-1 23501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123546-124164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 23546-1 241 64 bp Feature: domain Description: GIIM Note: maturase Location: 124221-124449 bp Feature: domain Description: GIIM Note: maturase Location: 1 24221 -1 24449 bp Feature: gene Location: 125519-126724 bp Feature: domain Description: COG3367 Location: 125657-126665 bp Feature: domain Description: COG3367 Location: 1 25657-1 26665 bp Feature: gene Location: 126883-127845 bp Feature: domain Description: PLPDE_III_AR_like_1 Location: 126886-127774 bp Feature: domain Description: PLPDE_III_AR_like_1 Location: 1 26886-1 27774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_HisK (cd13704), quinone_pig3 (TIGR02824), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3367 (Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family ), PLPDE_III_AR_like_1 (cd06815)

Seq: MCUF01000038.1 Shewanella sp. 10N.286.51.B7 10N.286.51.B7_contig_35, whole genome shotgun sequence (104877 bp)
Overview 1 RT 1: 21622-27482 bp Neighborhood of RT #1 [21622, 27482] recC CSP_CDS RVT-Retrons Feature: gene Location: 21622-25368 bp Feature: domain Description: recC Location: 21628-25177 bp Feature: domain Description: recC Location: 2 162 8-2 5177 bp Feature: gene Location: 25661-25867 bp Feature: domain Description: CSP_CDS Location: 25670-25856 bp Feature: domain Description: CSP_CDS Location: 2 5670-2 5856 bp Feature: gene Location: 25872-27059 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26022-26589 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 602 2 -2 6589 bp Feature: gene Location: 27098-27304 bp Feature: gene Location: 27315-27482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recC (TIGR01450), CSP_CDS (cd04458), RVT-Retrons