myRT

myRT report for GCA_002873695.1_ASM287369v1

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Seq: MCTU01000028.1 Vibrio splendidus strain 10N.286.52.C6 10N.286.52.C6_contig_122, whole genome shotgun sequence (5636 bp)
Overview 1 RT 1: 2141-4787 bp Neighborhood of RT #1 [2141, 5260] Arm-DNA-bind_3 INT_Rci_Hp1_C RVT-Retrons Feature: gene Location: 2141-3331 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2168-2438 bp Feature: domain Description: Arm-DNA-bind_3 Location: 21 68-2438 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2759-3260 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 2759-3260 bp Feature: gene Location: 3367-4083 bp Feature: gene Location: 4058-5260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4202-4787 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4202-4787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_Rci_Hp1_C (cd00796), RVT-Retrons

Seq: MCTU01000059.1 Vibrio splendidus strain 10N.286.52.C6 10N.286.52.C6_contig_22, whole genome shotgun sequence (211354 bp)
Overview 1 RT 1: 156735-161185 bp Neighborhood of RT #1 [156735, 161205] FDX-ACB RVT-Retrons PRK09539 MhpC Feature: gene Location: 156735-156911 bp Feature: domain Description: FDX-ACB Location: 156771-156906 bp Feature: domain Description: FDX-ACB Location: 156771-156906 bp Feature: gene Location: 157062-157880 bp Feature: gene Location: 157861-158877 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 157963-158533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 157963-158533 bp Feature: domain Description: PRK09539 Location: 158569-158776 bp Feature: domain Description: PRK09539 Location: 158569-158776 bp Feature: gene Location: 158879-159883 bp Feature: gene Location: 160333-161205 bp Feature: domain Description: MhpC Location: 160438-161185 bp Feature: domain Description: MhpC Location: 160438-161185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FDX-ACB (smart00896), RVT-Retrons, PRK09539 (tRNA-splicing endonuclease subunit beta; Reviewed), MhpC (COG0596)

Seq: MCTU01000115.1 Vibrio splendidus strain 10N.286.52.C6 10N.286.52.C6_contig_73, whole genome shotgun sequence (1813 bp)
Overview 1 RT 1: 112-1519 bp Neighborhood of RT #1 [112, 1743] RVT_N RVT-GII GIIM Feature: gene Location: 112-1743 bp Feature: RT Description: RVT_N Location: 319-562 bp Feature: RT Description: RVT_N Location: 3 19-562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607-123 4 bp Feature: domain Description: GIIM Note: maturase Location: 1294-1519 bp Feature: domain Description: GIIM Note: maturase Location: 1294-1519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)