myRT

myRT report for GCA_002874795.1_ASM287479v1

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Seq: MCSW01000081.1 Vibrio splendidus strain 10N.286.54.F3 10N.286.54.F3_contig_170, whole genome shotgun sequence (1489 bp)
Overview 1 RT 1: 1-1489 bp Neighborhood of RT #1 [1, 1488] RVT_N RVT-GII GIIM Feature: gene Location: 1-126 bp Feature: gene Location: 361-1488 bp Feature: domain Description: RVT_N Location: 409-652 bp Feature: domain Description: RVT_N Location: 409-652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-1324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 697-1 324 bp Feature: domain Description: GIIM Note: maturase Location: 1384-1489 bp Feature: domain Description: GIIM Note: maturase Location: 1 384-1 489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MCSW01000114.1 Vibrio splendidus strain 10N.286.54.F3 10N.286.54.F3_contig_20, whole genome shotgun sequence (11726 bp)
Overview 1 RT 1: 5473-11612 bp Neighborhood of RT #1 [5473, 11612] SR_Res_par HTH_23 DUF4158 DDE_Tnp_Tn3 RVT-DGRs Feature: gene Location: 5473-6099 bp Feature: domain Description: SR_Res_par Location: 5482-5911 bp Feature: domain Description: SR_Res_par Location: 5482 -5911 bp Feature: domain Description: HTH_23 Location: 5962-6070 bp Feature: domain Description: HTH_2 3 Location: 5962 -6070 bp Feature: gene Location: 6302-9331 bp Feature: domain Description: DUF4158 Location: 6335-6821 bp Feature: domain Description: DUF4158 Location: 6335-682 1 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 8072-9236 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 8072 -92 36 bp Feature: gene Location: 9509-10810 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9719-10424 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9719-1042 4 bp Feature: gene Location: 11100-11612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_Res_par (cd03767), HTH_23 (pfam13384), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT-DGRs

Seq: MCSW01000139.1 Vibrio splendidus strain 10N.286.54.F3 10N.286.54.F3_contig_222, whole genome shotgun sequence (1431 bp)
Overview 1 RT 1: 16-880 bp Neighborhood of RT #1 [16, 999] RVT-UG15 Feature: gene Location: 16-999 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 475-880 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 475-880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15

Seq: MCSW01000188.1 Vibrio splendidus strain 10N.286.54.F3 10N.286.54.F3_contig_59, whole genome shotgun sequence (16358 bp)
Overview 1 RT 1: 199-3570 bp Neighborhood of RT #1 [199, 3570] RVT_N RVT-GII GIIM Feature: gene Location: 199-1830 bp Feature: domain Description: RVT_N Location: 406-649 bp Feature: domain Description: RVT_N Location: 4 06-64 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-1321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694 -1321 bp Feature: domain Description: GIIM Note: maturase Location: 1381-1606 bp Feature: domain Description: GIIM Note: maturase Location: 1381-1606 bp Feature: gene Location: 2211-2690 bp Feature: gene Location: 2983-3570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MCSW01000214.1 Vibrio splendidus strain 10N.286.54.F3 10N.286.54.F3_contig_82, whole genome shotgun sequence (1717 bp)
Overview 1 RT 1: 299-1717 bp Neighborhood of RT #1 [299, 1716] RVT_N RVT-GII GIIM Feature: gene Location: 299-496 bp Feature: gene Location: 574-1716 bp Feature: domain Description: RVT_N Location: 622-865 bp Feature: domain Description: RVT_N Location: 622-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-1537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-15 37 bp Feature: domain Description: GIIM Note: maturase Location: 1594-1717 bp Feature: domain Description: GIIM Note: maturase Location: 15 94-1717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MCSW01000219.1 Vibrio splendidus strain 10N.286.54.F3 10N.286.54.F3_contig_87, whole genome shotgun sequence (15714 bp)
Overview 1 RT 1: 6304-9972 bp Neighborhood of RT #1 [6304, 10346] MqsR RVT-UG11 ComA-like_MBL-fold Feature: gene Location: 6304-6624 bp Feature: domain Description: MqsR Location: 6325-6619 bp Feature: domain Description: MqsR Location: 6 325-6 6 19 bp Feature: gene Location: 6782-7162 bp Feature: gene Location: 7476-8246 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 7608-8058 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 76 08-8058 bp Feature: gene Location: 8352-8567 bp Feature: gene Location: 9309-10346 bp Feature: domain Description: ComA-like_MBL-fold Location: 9324-9972 bp Feature: domain Description: ComA-like_MBL-fold Location: 9324-9972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MqsR (cl18942), RVT-UG11, ComA-like_MBL-fold (cd07731)