myRT

myRT report for GCA_002875005.1_ASM287500v1

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Seq: MDBY01000021.1 Vibrio splendidus strain 10N.222.45.C6 10N.222.45.C6_contig_116, whole genome shotgun sequence (9054 bp)
Overview 1 RT 1: 3-6873 bp Neighborhood of RT #1 [3, 6873] RVT-GII GIIM PRK08250 QdoI HTH_ARAC RVT_N RVT-GII GIIM Feature: gene Location: 3-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-71 7 bp Feature: domain Description: GIIM Note: maturase Location: 762-972 bp Feature: domain Description: GIIM Note: maturase Location: 762-972 bp Feature: gene Location: 1261-1737 bp Feature: gene Location: 2389-3105 bp Feature: domain Description: PRK08250 Location: 2392-3082 bp Feature: domain Description: PRK08250 Location: 2392-3082 bp Feature: gene Location: 3204-3974 bp Feature: domain Description: QdoI Location: 3222-3456 bp Feature: domain Description: QdoI Location: 3222-3456 bp Feature: domain Description: HTH_ARAC Location: 3717-3960 bp Feature: domain Description: HTH_ARAC Location: 371 7-3960 bp Feature: gene Location: 4162-4485 bp Feature: gene Location: 4521-6152 bp Feature: domain Description: RVT_N Location: 4728-4971 bp Feature: domain Description: RVT_N Location: 4728-4971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5016-5643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 6-5643 bp Feature: domain Description: GIIM Note: maturase Location: 5703-5928 bp Feature: domain Description: GIIM Note: maturase Location: 5703-5928 bp Feature: gene Location: 6319-6465 bp Feature: gene Location: 6475-6873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK08250 (glutamine amidotransferase; Provisional), QdoI (COG1917), HTH_ARAC (smart00342), RVT_N (pfam13655)

Seq: MDBY01000034.1 Vibrio splendidus strain 10N.222.45.C6 10N.222.45.C6_contig_128, whole genome shotgun sequence (2147 bp)
Overview 1 RT 1: 278-1801 bp Neighborhood of RT #1 [278, 2025] RVT_N RVT-GII GIIM Feature: gene Location: 278-475 bp Feature: gene Location: 553-2025 bp Feature: domain Description: RVT_N Location: 601-844 bp Feature: domain Description: RVT_N Location: 601-844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889-1516 bp Feature: domain Description: GIIM Note: maturase Location: 1573-1801 bp Feature: domain Description: GIIM Note: maturase Location: 1573-1801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBY01000093.1 Vibrio splendidus strain 10N.222.45.C6 10N.222.45.C6_contig_32, whole genome shotgun sequence (84890 bp)
Overview 1 RT 1: 64183-70493 bp Neighborhood of RT #1 [64183, 70501] pheT RVT-UG7 PHA02517 InsE Feature: gene Location: 64183-66588 bp Feature: domain Description: pheT Location: 64186-66586 bp Feature: domain Description: pheT Location: 64186-66586 bp Feature: gene Location: 66734-67471 bp Feature: gene Location: 67468-69186 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 67990-68395 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 67990-683 95 bp Feature: gene Location: 69453-70157 bp Feature: domain Description: PHA02517 Location: 69471-70146 bp Feature: domain Description: PHA02517 Location: 69471-70146 bp Feature: gene Location: 70190-70501 bp Feature: domain Description: InsE Location: 70193-70493 bp Feature: domain Description: InsE Location: 70193 -70493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pheT (PRK09616), RVT-UG7, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: MDBY01000122.1 Vibrio splendidus strain 10N.222.45.C6 10N.222.45.C6_contig_59, whole genome shotgun sequence (71655 bp)
Overview 1 RT 1: 62742-67279 bp Neighborhood of RT #1 [62742, 67279] Spo0M SLATT_5 RVT-UG17 DUF3187 Feature: gene Location: 62742-63485 bp Feature: domain Description: Spo0M Location: 62748-63387 bp Feature: domain Description: Spo0M Location: 6274 8-63387 bp Feature: gene Location: 63951-64526 bp Feature: domain Description: SLATT_5 Location: 63975-64512 bp Feature: domain Description: SLATT_5 Location: 63975-64 512 bp Feature: gene Location: 64568-65842 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 64748-65330 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 64 74 8-65330 bp Feature: gene Location: 65948-66931 bp Feature: domain Description: DUF3187 Location: 65990-66929 bp Feature: domain Description: DUF3187 Location: 65990-66929 bp Feature: gene Location: 67091-67279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0M (pfam07070), SLATT_5 (pfam18160), RVT-UG17, DUF3187 (pfam11383)

Seq: MDBY01000133.1 Vibrio splendidus strain 10N.222.45.C6 10N.222.45.C6_contig_69, whole genome shotgun sequence (82988 bp)
Overview 1 RT 1: 299-3484 bp Neighborhood of RT #1 [299, 3484] RVT-UNC Feature: gene Location: 299-1195 bp Feature: gene Location: 1195-2871 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1597-1966 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 15 97-1966 bp Feature: gene Location: 2883-3017 bp Feature: gene Location: 3098-3484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG3/RVT-UG5/RVT-UG25(RVT-UNC)

Seq: MDBY01000155.1 Vibrio splendidus strain 10N.222.45.C6 10N.222.45.C6_contig_89, whole genome shotgun sequence (24526 bp)
Overview 1 RT 1: 16256-24524 bp Neighborhood of RT #1 [16256, 24524] RVT_N RVT-GII GIIM Feature: gene Location: 16256-16648 bp Feature: gene Location: 16952-22336 bp Feature: gene Location: 22696-24285 bp Feature: domain Description: RVT_N Location: 22861-23104 bp Feature: domain Description: RVT_N Location: 2286 1-23104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23149-23776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23149-23776 bp Feature: domain Description: GIIM Note: maturase Location: 23836-24061 bp Feature: domain Description: GIIM Note: maturase Location: 23836 -2406 1 bp Feature: gene Location: 24303-24524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBY01000158.1 Vibrio splendidus strain 10N.222.45.C6 10N.222.45.C6_contig_91, whole genome shotgun sequence (32436 bp)
Overview 1 RT 1: 14141-21105 bp Neighborhood of RT #1 [14141, 21152] COG4688 RVT-Retrons TIR_2 DUF4365 Feature: gene Location: 14141-15751 bp Feature: gene Location: 15744-18035 bp Feature: domain Description: COG4688 Location: 17271-17589 bp Feature: domain Description: COG4688 Location: 17 27 1-17 589 bp Feature: gene Location: 18577-20166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18829-19441 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18829-19441 bp Feature: domain Description: TIR_2 Location: 19777-20125 bp Feature: domain Description: TIR_2 Location: 197 7 7 -20125 bp Feature: gene Location: 20188-20343 bp Feature: gene Location: 20598-21152 bp Feature: domain Description: DUF4365 Location: 20655-21105 bp Feature: domain Description: DUF4365 Location: 20655-21105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-Retrons, TIR_2 (pfam13676), DUF4365 (pfam14280)

Seq: MDBY01000161.1 Vibrio splendidus strain 10N.222.45.C6 10N.222.45.C6_contig_94, whole genome shotgun sequence (34306 bp)
Overview 1 RT 1: 2-2512 bp Neighborhood of RT #1 [2, 2517] RVT_N RVT-GII GIIM PRK04980 Feature: gene Location: 2-127 bp Feature: gene Location: 362-1834 bp Feature: domain Description: RVT_N Location: 410-653 bp Feature: domain Description: RVT_N Location: 410-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698 -1325 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1610 bp Feature: domain Description: GIIM Note: maturase Location: 138 5-1610 bp Feature: gene Location: 1919-2116 bp Feature: gene Location: 2206-2517 bp Feature: domain Description: PRK04980 Location: 2212-2512 bp Feature: domain Description: PRK0498 0 Location: 2212-2512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK04980 (hypothetical protein; Provisional)