myRT

myRT report for GCA_002875065.1_ASM287506v1

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Seq: MDBW01000004.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_100, whole genome shotgun sequence (24368 bp)
Overview 1 RT 1: 1-8272 bp Neighborhood of RT #1 [1, 8272] RVT_N RVT-GII GIIM Feature: gene Location: 1-225 bp Feature: gene Location: 243-1832 bp Feature: domain Description: RVT_N Location: 408-651 bp Feature: domain Description: RVT_N Location: 408-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 696-1323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 696-1 323 bp Feature: domain Description: GIIM Note: maturase Location: 1383-1608 bp Feature: domain Description: GIIM Note: maturase Location: 1 383-1 608 bp Feature: gene Location: 2192-7576 bp Feature: gene Location: 7880-8272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBW01000013.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_109, whole genome shotgun sequence (32509 bp)
Overview 1 RT 1: 14141-21105 bp Neighborhood of RT #1 [14141, 21152] COG4688 RVT-Retrons TIR_2 DUF4365 Feature: gene Location: 14141-15751 bp Feature: gene Location: 15744-18035 bp Feature: domain Description: COG4688 Location: 17271-17589 bp Feature: domain Description: COG4688 Location: 172 71-17589 bp Feature: gene Location: 18577-20166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18829-19441 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1882 9-19441 bp Feature: domain Description: TIR_2 Location: 19777-20125 bp Feature: domain Description: TIR_2 Location: 19777-2 012 5 bp Feature: gene Location: 20188-20343 bp Feature: gene Location: 20598-21152 bp Feature: domain Description: DUF4365 Location: 20655-21105 bp Feature: domain Description: DUF4365 Location: 2 0655-2 1105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-Retrons, TIR_2 (pfam13676), DUF4365 (pfam14280)

Seq: MDBW01000077.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_167, whole genome shotgun sequence (383 bp)
Overview 1 RT 1: 3-381 bp Neighborhood of RT #1 [3, 380] RVT-GII Feature: gene Location: 3-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225-3 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MDBW01000078.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_168, whole genome shotgun sequence (306 bp)
Overview 1 RT 1: 3-306 bp Neighborhood of RT #1 [3, 305] RVT-GII Feature: gene Location: 3-305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MDBW01000086.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_22, whole genome shotgun sequence (71782 bp)
Overview 1 RT 1: 62868-67405 bp Neighborhood of RT #1 [62868, 67405] Spo0M SLATT_5 RVT-UG17 DUF3187 Feature: gene Location: 62868-63611 bp Feature: domain Description: Spo0M Location: 62874-63513 bp Feature: domain Description: Spo0M Location: 62874-635 13 bp Feature: gene Location: 64077-64652 bp Feature: domain Description: SLATT_5 Location: 64101-64638 bp Feature: domain Description: SLATT_5 Location: 64101-64638 bp Feature: gene Location: 64694-65968 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 64874-65456 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 64874-65 45 6 bp Feature: gene Location: 66074-67057 bp Feature: domain Description: DUF3187 Location: 66116-67055 bp Feature: domain Description: DUF3187 Location: 66116-6705 5 bp Feature: gene Location: 67217-67405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0M (pfam07070), SLATT_5 (pfam18160), RVT-UG17, DUF3187 (pfam11383)

Seq: MDBW01000096.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_31, whole genome shotgun sequence (2147 bp)
Overview 1 RT 1: 278-1801 bp Neighborhood of RT #1 [278, 2025] RVT_N RVT-GII GIIM Feature: gene Location: 278-475 bp Feature: gene Location: 553-2025 bp Feature: domain Description: RVT_N Location: 601-844 bp Feature: domain Description: RVT_N Location: 6 01-844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889-1516 bp Feature: domain Description: GIIM Note: maturase Location: 1573-1801 bp Feature: domain Description: GIIM Note: maturase Location: 1573-1801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBW01000097.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_32, whole genome shotgun sequence (9056 bp)
Overview 1 RT 1: 2183-8862 bp Neighborhood of RT #1 [2183, 9053] RVT_N RVT-GII GIIM QdoI HTH_ARAC PRK08250 RVT-GII GIIM Feature: gene Location: 2183-2581 bp Feature: gene Location: 2591-2737 bp Feature: gene Location: 2904-4535 bp Feature: domain Description: RVT_N Location: 3111-3354 bp Feature: domain Description: RVT_N Location: 3111-3354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3399-4026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3399-4026 bp Feature: domain Description: GIIM Note: maturase Location: 4086-4311 bp Feature: domain Description: GIIM Note: maturase Location: 4086-4311 bp Feature: gene Location: 4571-4894 bp Feature: gene Location: 5082-5852 bp Feature: domain Description: QdoI Location: 5100-5334 bp Feature: domain Description: QdoI Location: 5100-5334 bp Feature: domain Description: HTH_ARAC Location: 5595-5838 bp Feature: domain Description: HTH_ARAC Location: 5595-5838 bp Feature: gene Location: 5951-6667 bp Feature: domain Description: PRK08250 Location: 5954-6644 bp Feature: domain Description: PRK08250 Location: 5954-6644 bp Feature: gene Location: 7319-7795 bp Feature: gene Location: 7893-9053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7989-8607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 989-8607 bp Feature: domain Description: GIIM Note: maturase Location: 8652-8862 bp Feature: domain Description: GIIM Note: maturase Location: 8652-8862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), QdoI (COG1917), HTH_ARAC (smart00342), PRK08250 (glutamine amidotransferase; Provisional)

Seq: MDBW01000119.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_52, whole genome shotgun sequence (84891 bp)
Overview 1 RT 1: 64183-70493 bp Neighborhood of RT #1 [64183, 70501] pheT RVT-UG7 PHA02517 InsE Feature: gene Location: 64183-66588 bp Feature: domain Description: pheT Location: 64186-66586 bp Feature: domain Description: pheT Location: 6418 6-6658 6 bp Feature: gene Location: 66734-67471 bp Feature: gene Location: 67468-69186 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 67990-68395 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 67990-68 395 bp Feature: gene Location: 69453-70157 bp Feature: domain Description: PHA02517 Location: 69471-70146 bp Feature: domain Description: PHA02517 Location: 69471-70146 bp Feature: gene Location: 70190-70501 bp Feature: domain Description: InsE Location: 70193-70493 bp Feature: domain Description: InsE Location: 70193-70493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pheT (PRK09616), RVT-UG7, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: MDBW01000139.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_70, whole genome shotgun sequence (82990 bp)
Overview 1 RT 1: 300-3485 bp Neighborhood of RT #1 [300, 3485] RVT-UNC Feature: gene Location: 300-1196 bp Feature: gene Location: 1196-2872 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1598-1967 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 159 8-19 67 bp Feature: gene Location: 2884-3018 bp Feature: gene Location: 3099-3485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG3/RVT-UG5/RVT-UG25(RVT-UNC)

Seq: MDBW01000163.1 Vibrio splendidus strain 10N.222.46.A6 10N.222.46.A6_contig_92, whole genome shotgun sequence (34189 bp)
Overview 1 RT 1: 3-2513 bp Neighborhood of RT #1 [3, 2518] RVT_N RVT-GII GIIM PRK04980 Feature: gene Location: 3-128 bp Feature: gene Location: 363-1835 bp Feature: domain Description: RVT_N Location: 411-654 bp Feature: domain Description: RVT_N Location: 411-654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 699-1326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 699-1326 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1611 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1611 bp Feature: gene Location: 1920-2117 bp Feature: gene Location: 2207-2518 bp Feature: domain Description: PRK04980 Location: 2213-2513 bp Feature: domain Description: PRK04980 Location: 2213-2513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK04980 (hypothetical protein; Provisional)