myRT

myRT report for GCA_002875085.1_ASM287508v1

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Seq: MDBR01000003.1 Vibrio splendidus strain 10N.222.46.E1 10N.222.46.E1_contig_10, whole genome shotgun sequence (84921 bp)
Overview 1 RT 1: 14390-20706 bp Neighborhood of RT #1 [14390, 20708] InsE PHA02517 RVT-UG7 pheT Feature: gene Location: 14390-14701 bp Feature: domain Description: InsE Location: 14393-14693 bp Feature: domain Description: InsE Location: 1 4393-1 4693 bp Feature: gene Location: 14734-15438 bp Feature: domain Description: PHA02517 Location: 14752-15427 bp Feature: domain Description: PHA0251 7 Location: 1 4752-1 5427 bp Feature: gene Location: 15705-17423 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 16227-16632 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 6227-1 6632 bp Feature: gene Location: 17420-18157 bp Feature: gene Location: 18303-20708 bp Feature: domain Description: pheT Location: 18306-20706 bp Feature: domain Description: pheT Location: 1 8306-20706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG7, pheT (PRK09616)

Seq: MDBR01000006.1 Vibrio splendidus strain 10N.222.46.E1 10N.222.46.E1_contig_102, whole genome shotgun sequence (9054 bp)
Overview 1 RT 1: 2182-8861 bp Neighborhood of RT #1 [2182, 9052] RVT_N RVT-GII GIIM QdoI HTH_ARAC PRK08250 RVT-GII GIIM Feature: gene Location: 2182-2580 bp Feature: gene Location: 2590-2736 bp Feature: gene Location: 2903-4534 bp Feature: domain Description: RVT_N Location: 3110-3353 bp Feature: domain Description: RVT_N Location: 3110-3353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3398-4025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3398-402 5 bp Feature: domain Description: GIIM Note: maturase Location: 4085-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4085-4310 bp Feature: gene Location: 4570-4893 bp Feature: gene Location: 5081-5851 bp Feature: domain Description: QdoI Location: 5099-5333 bp Feature: domain Description: QdoI Location: 5099-5333 bp Feature: domain Description: HTH_ARAC Location: 5594-5837 bp Feature: domain Description: HTH_ARAC Location: 5594-5837 bp Feature: gene Location: 5950-6666 bp Feature: domain Description: PRK08250 Location: 5953-6643 bp Feature: domain Description: PRK082 50 Location: 5953-6643 bp Feature: gene Location: 7318-7794 bp Feature: gene Location: 7892-9052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-8606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-8606 bp Feature: domain Description: GIIM Note: maturase Location: 8651-8861 bp Feature: domain Description: GIIM Note: maturase Location: 8651-8861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), QdoI (COG1917), HTH_ARAC (smart00342), PRK08250 (glutamine amidotransferase; Provisional)

Seq: MDBR01000017.1 Vibrio splendidus strain 10N.222.46.E1 10N.222.46.E1_contig_112, whole genome shotgun sequence (32335 bp)
Overview 1 RT 1: 14141-21105 bp Neighborhood of RT #1 [14141, 21152] COG4688 RVT-Retrons TIR_2 DUF4365 Feature: gene Location: 14141-15751 bp Feature: gene Location: 15744-18035 bp Feature: domain Description: COG4688 Location: 17271-17589 bp Feature: domain Description: COG4688 Location: 17271-17589 bp Feature: gene Location: 18577-20166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18829-19441 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18829-19441 bp Feature: domain Description: TIR_2 Location: 19777-20125 bp Feature: domain Description: TIR_2 Location: 19777-20125 bp Feature: gene Location: 20188-20343 bp Feature: gene Location: 20598-21152 bp Feature: domain Description: DUF4365 Location: 20655-21105 bp Feature: domain Description: DUF43 65 Location: 20655-21105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-Retrons, TIR_2 (pfam13676), DUF4365 (pfam14280)

Seq: MDBR01000042.1 Vibrio splendidus strain 10N.222.46.E1 10N.222.46.E1_contig_136, whole genome shotgun sequence (2147 bp)
Overview 1 RT 1: 123-1530 bp Neighborhood of RT #1 [123, 1754] RVT_N RVT-GII GIIM Feature: gene Location: 123-1754 bp Feature: domain Description: RVT_N Location: 330-573 bp Feature: domain Description: RVT_N Location: 330-573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 618-1245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 618-124 5 bp Feature: domain Description: GIIM Note: maturase Location: 1302-1530 bp Feature: domain Description: GIIM Note: maturase Location: 1302-1530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBR01000085.1 Vibrio splendidus strain 10N.222.46.E1 10N.222.46.E1_contig_26, whole genome shotgun sequence (71661 bp)
Overview 1 RT 1: 62748-67285 bp Neighborhood of RT #1 [62748, 67285] Spo0M SLATT_5 RVT-UG17 DUF3187 Feature: gene Location: 62748-63491 bp Feature: domain Description: Spo0M Location: 62754-63393 bp Feature: domain Description: Spo0M Location: 6275 4-63393 bp Feature: gene Location: 63957-64532 bp Feature: domain Description: SLATT_5 Location: 63981-64518 bp Feature: domain Description: SLATT_5 Location: 63981-645 18 bp Feature: gene Location: 64574-65848 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 64754-65336 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6475 4-65 336 bp Feature: gene Location: 65954-66937 bp Feature: domain Description: DUF3187 Location: 65996-66935 bp Feature: domain Description: DUF3187 Location: 65 996-66935 bp Feature: gene Location: 67097-67285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0M (pfam07070), SLATT_5 (pfam18160), RVT-UG17, DUF3187 (pfam11383)

Seq: MDBR01000105.1 Vibrio splendidus strain 10N.222.46.E1 10N.222.46.E1_contig_44, whole genome shotgun sequence (83020 bp)
Overview 1 RT 1: 79537-82722 bp Neighborhood of RT #1 [79537, 82722] RVT-UNC Feature: gene Location: 79537-79923 bp Feature: gene Location: 80004-80138 bp Feature: gene Location: 80150-81826 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 80552-80921 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 80552-80921 bp Feature: gene Location: 81826-82722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG3/RVT-UG5/RVT-UG25(RVT-UNC)

Seq: MDBR01000132.1 Vibrio splendidus strain 10N.222.46.E1 10N.222.46.E1_contig_69, whole genome shotgun sequence (24415 bp)
Overview 1 RT 1: 3-8271 bp Neighborhood of RT #1 [3, 8271] RVT_N RVT-GII GIIM Feature: gene Location: 3-224 bp Feature: gene Location: 242-1831 bp Feature: domain Description: RVT_N Location: 407-650 bp Feature: domain Description: RVT_N Location: 407 -650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-1322 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1607 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1607 bp Feature: gene Location: 2191-7575 bp Feature: gene Location: 7879-8271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBR01000158.1 Vibrio splendidus strain 10N.222.46.E1 10N.222.46.E1_contig_92, whole genome shotgun sequence (34187 bp)
Overview 1 RT 1: 2-2512 bp Neighborhood of RT #1 [2, 2517] RVT_N RVT-GII GIIM PRK04980 Feature: gene Location: 2-127 bp Feature: gene Location: 362-1834 bp Feature: domain Description: RVT_N Location: 410-653 bp Feature: domain Description: RVT_N Location: 410-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698 -1325 bp Feature: domain Description: GIIM Note: maturase Location: 1385-1610 bp Feature: domain Description: GIIM Note: maturase Location: 138 5-1610 bp Feature: gene Location: 1919-2116 bp Feature: gene Location: 2206-2517 bp Feature: domain Description: PRK04980 Location: 2212-2512 bp Feature: domain Description: PRK0498 0 Location: 2212-2512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK04980 (hypothetical protein; Provisional)