myRT

myRT report for GCA_002875095.1_ASM287509v1

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Seq: MDBU01000003.1 Vibrio splendidus strain 10N.222.46.B6 10N.222.46.B6_contig_10, whole genome shotgun sequence (83631 bp)
Overview 1 RT 1: 299-3484 bp Neighborhood of RT #1 [299, 3484] RVT-UNC Feature: gene Location: 299-1195 bp Feature: gene Location: 1195-2871 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1597-1966 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 597-1 966 bp Feature: gene Location: 2883-3017 bp Feature: gene Location: 3098-3484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG3/RVT-UG5/RVT-UG25(RVT-UNC)

Seq: MDBU01000104.1 Vibrio splendidus strain 10N.222.46.B6 10N.222.46.B6_contig_30, whole genome shotgun sequence (32335 bp)
Overview 1 RT 1: 14141-21105 bp Neighborhood of RT #1 [14141, 21152] COG4688 RVT-Retrons TIR_2 DUF4365 Feature: gene Location: 14141-15751 bp Feature: gene Location: 15744-18035 bp Feature: domain Description: COG4688 Location: 17271-17589 bp Feature: domain Description: COG4688 Location: 172 71-17589 bp Feature: gene Location: 18577-20166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18829-19441 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1882 9-19441 bp Feature: domain Description: TIR_2 Location: 19777-20125 bp Feature: domain Description: TIR_2 Location: 19777-2 012 5 bp Feature: gene Location: 20188-20343 bp Feature: gene Location: 20598-21152 bp Feature: domain Description: DUF4365 Location: 20655-21105 bp Feature: domain Description: DUF4365 Location: 2 0655-2 1105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-Retrons, TIR_2 (pfam13676), DUF4365 (pfam14280)

Seq: MDBU01000113.1 Vibrio splendidus strain 10N.222.46.B6 10N.222.46.B6_contig_39, whole genome shotgun sequence (24256 bp)
Overview 1 RT 1: 15986-24254 bp Neighborhood of RT #1 [15986, 24254] RVT_N RVT-GII GIIM Feature: gene Location: 15986-16378 bp Feature: gene Location: 16682-22066 bp Feature: gene Location: 22426-24015 bp Feature: domain Description: RVT_N Location: 22591-22834 bp Feature: domain Description: RVT_N Location: 22591-2283 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22879-23506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22879-23 506 bp Feature: domain Description: GIIM Note: maturase Location: 23566-23791 bp Feature: domain Description: GIIM Note: maturase Location: 23 566-23 791 bp Feature: gene Location: 24033-24254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBU01000115.1 Vibrio splendidus strain 10N.222.46.B6 10N.222.46.B6_contig_40, whole genome shotgun sequence (76113 bp)
Overview 1 RT 1: 68192-74922 bp Neighborhood of RT #1 [68192, 74930] pheT RVT-UG7 PHA02517 InsE Feature: gene Location: 68192-70597 bp Feature: domain Description: pheT Location: 68195-70595 bp Feature: domain Description: pheT Location: 68195-70595 bp Feature: gene Location: 70743-71480 bp Feature: gene Location: 71477-73195 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 71999-72404 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 71999-724 04 bp Feature: gene Location: 73462-74166 bp Feature: domain Description: PHA02517 Location: 73480-74155 bp Feature: domain Description: PHA02517 Location: 734 80-74 155 bp Feature: gene Location: 74199-74930 bp Feature: domain Description: InsE Location: 74763-74922 bp Feature: domain Description: InsE Location: 74 763-74 922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pheT (PRK09616), RVT-UG7, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: MDBU01000140.1 Vibrio splendidus strain 10N.222.46.B6 10N.222.46.B6_contig_63, whole genome shotgun sequence (34306 bp)
Overview 1 RT 1: 31532-34305 bp Neighborhood of RT #1 [31532, 34305] PRK04980 RVT_N RVT-GII GIIM Feature: gene Location: 31532-31684 bp Feature: gene Location: 31790-32101 bp Feature: domain Description: PRK04980 Location: 31796-32096 bp Feature: domain Description: PRK04980 Location: 31796-32096 bp Feature: gene Location: 32473-34104 bp Feature: domain Description: RVT_N Location: 32680-32923 bp Feature: domain Description: RVT_N Location: 32680-32923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32968-33595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32968-335 95 bp Feature: domain Description: GIIM Note: maturase Location: 33655-33880 bp Feature: domain Description: GIIM Note: maturase Location: 3365 5 -33880 bp Feature: gene Location: 34180-34305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04980 (hypothetical protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBU01000144.1 Vibrio splendidus strain 10N.222.46.B6 10N.222.46.B6_contig_67, whole genome shotgun sequence (9054 bp)
Overview 1 RT 1: 2182-8861 bp Neighborhood of RT #1 [2182, 9052] RVT_N RVT-GII GIIM QdoI HTH_ARAC PRK08250 RVT-GII GIIM Feature: gene Location: 2182-2580 bp Feature: gene Location: 2590-2736 bp Feature: gene Location: 2903-4534 bp Feature: domain Description: RVT_N Location: 3110-3353 bp Feature: domain Description: RVT_N Location: 3110-3353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3398-4025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3398-4025 bp Feature: domain Description: GIIM Note: maturase Location: 4085-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4085-4310 bp Feature: gene Location: 4570-4893 bp Feature: gene Location: 5081-5851 bp Feature: domain Description: QdoI Location: 5099-5333 bp Feature: domain Description: QdoI Location: 5099-5333 bp Feature: domain Description: HTH_ARAC Location: 5594-5837 bp Feature: domain Description: HTH_ARAC Location: 5594-5837 bp Feature: gene Location: 5950-6666 bp Feature: domain Description: PRK08250 Location: 5953-6643 bp Feature: domain Description: PRK08250 Location: 5953-6 6 43 bp Feature: gene Location: 7318-7794 bp Feature: gene Location: 7892-9052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-8606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-86 06 bp Feature: domain Description: GIIM Note: maturase Location: 8651-8861 bp Feature: domain Description: GIIM Note: maturase Location: 86 51-886 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), QdoI (COG1917), HTH_ARAC (smart00342), PRK08250 (glutamine amidotransferase; Provisional)

Seq: MDBU01000145.1 Vibrio splendidus strain 10N.222.46.B6 10N.222.46.B6_contig_68, whole genome shotgun sequence (2147 bp)
Overview 1 RT 1: 278-1801 bp Neighborhood of RT #1 [278, 2025] RVT_N RVT-GII GIIM Feature: gene Location: 278-475 bp Feature: gene Location: 553-2025 bp Feature: domain Description: RVT_N Location: 601-844 bp Feature: domain Description: RVT_N Location: 601-844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 889-1516 bp Feature: domain Description: GIIM Note: maturase Location: 1573-1801 bp Feature: domain Description: GIIM Note: maturase Location: 157 3-1801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBU01000179.1 Vibrio splendidus strain 10N.222.46.B6 10N.222.46.B6_contig_99, whole genome shotgun sequence (29597 bp)
Overview 1 RT 1: 4377-7869 bp Neighborhood of RT #1 [4377, 7869] DUF3187 RVT-UG17 SLATT_5 Feature: gene Location: 4377-4565 bp Feature: gene Location: 4725-5708 bp Feature: domain Description: DUF3187 Location: 4767-5706 bp Feature: domain Description: DUF318 7 Location: 4767-5706 bp Feature: gene Location: 5814-7088 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5994-6576 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 5994-6576 bp Feature: gene Location: 7130-7705 bp Feature: domain Description: SLATT_5 Location: 7154-7691 bp Feature: domain Description: SLATT_5 Location: 7154-7691 bp Feature: gene Location: 7738-7869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3187 (pfam11383), RVT-UG17, SLATT_5 (pfam18160)