myRT

myRT report for GCA_002875225.1_ASM287522v1

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Seq: MDBK01000018.1 Vibrio splendidus strain 10N.222.49.C7 10N.222.49.C7_contig_113, whole genome shotgun sequence (24331 bp)
Overview 1 RT 1: 16060-24328 bp Neighborhood of RT #1 [16060, 24328] RVT_N RVT-GII GIIM Feature: gene Location: 16060-16452 bp Feature: gene Location: 16756-22140 bp Feature: gene Location: 22500-24089 bp Feature: domain Description: RVT_N Location: 22665-22908 bp Feature: domain Description: RVT_N Location: 22665-22908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22953-23580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22953-23580 bp Feature: domain Description: GIIM Note: maturase Location: 23640-23865 bp Feature: domain Description: GIIM Note: maturase Location: 23640-23865 bp Feature: gene Location: 24107-24328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBK01000022.1 Vibrio splendidus strain 10N.222.49.C7 10N.222.49.C7_contig_117, whole genome shotgun sequence (2091 bp)
Overview 1 RT 1: 278-1745 bp Neighborhood of RT #1 [278, 1969] RVT_N RVT-GII GIIM Feature: gene Location: 278-475 bp Feature: gene Location: 553-951 bp Feature: domain Description: RVT_N Location: 601-844 bp Feature: domain Description: RVT_N Location: 601-844 bp Feature: gene Location: 914-1969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1460 bp Feature: domain Description: GIIM Note: maturase Location: 1517-1745 bp Feature: domain Description: GIIM Note: maturase Location: 1517-1745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDBK01000091.1 Vibrio splendidus strain 10N.222.49.C7 10N.222.49.C7_contig_25, whole genome shotgun sequence (32336 bp)
Overview 1 RT 1: 14141-21105 bp Neighborhood of RT #1 [14141, 21152] COG4688 RVT-Retrons TIR_2 DUF4365 Feature: gene Location: 14141-15751 bp Feature: gene Location: 15744-18035 bp Feature: domain Description: COG4688 Location: 17271-17589 bp Feature: domain Description: COG4688 Location: 17271-17589 bp Feature: gene Location: 18577-20166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18829-19441 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18829-19441 bp Feature: domain Description: TIR_2 Location: 19777-20125 bp Feature: domain Description: TIR_2 Location: 19777-20125 bp Feature: gene Location: 20188-20343 bp Feature: gene Location: 20598-21152 bp Feature: domain Description: DUF4365 Location: 20655-21105 bp Feature: domain Description: DUF43 65 Location: 20655-21105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-Retrons, TIR_2 (pfam13676), DUF4365 (pfam14280)

Seq: MDBK01000112.1 Vibrio splendidus strain 10N.222.49.C7 10N.222.49.C7_contig_44, whole genome shotgun sequence (84931 bp)
Overview 1 RT 1: 64223-70533 bp Neighborhood of RT #1 [64223, 70541] pheT RVT-UG7 PHA02517 InsE Feature: gene Location: 64223-66628 bp Feature: domain Description: pheT Location: 64226-66626 bp Feature: domain Description: pheT Location: 64 226-66626 bp Feature: gene Location: 66774-67511 bp Feature: gene Location: 67508-69226 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 68030-68435 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 68030-684 35 bp Feature: gene Location: 69493-70197 bp Feature: domain Description: PHA02517 Location: 69511-70186 bp Feature: domain Description: PHA02517 Location: 69511-70186 bp Feature: gene Location: 70230-70541 bp Feature: domain Description: InsE Location: 70233-70533 bp Feature: domain Description: InsE Location: 70233-70533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pheT (PRK09616), RVT-UG7, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: MDBK01000119.1 Vibrio splendidus strain 10N.222.49.C7 10N.222.49.C7_contig_50, whole genome shotgun sequence (82990 bp)
Overview 1 RT 1: 300-3485 bp Neighborhood of RT #1 [300, 3485] RVT-UNC Feature: gene Location: 300-1196 bp Feature: gene Location: 1196-2872 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1598-1967 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 15 98-1967 bp Feature: gene Location: 2884-3018 bp Feature: gene Location: 3099-3485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG3/RVT-UG5/RVT-UG25(RVT-UNC)

Seq: MDBK01000125.1 Vibrio splendidus strain 10N.222.49.C7 10N.222.49.C7_contig_56, whole genome shotgun sequence (71657 bp)
Overview 1 RT 1: 62743-67280 bp Neighborhood of RT #1 [62743, 67280] Spo0M SLATT_5 RVT-UG17 DUF3187 Feature: gene Location: 62743-63486 bp Feature: domain Description: Spo0M Location: 62749-63388 bp Feature: domain Description: Spo0M Location: 6 2749-6 3388 bp Feature: gene Location: 63952-64527 bp Feature: domain Description: SLATT_5 Location: 63976-64513 bp Feature: domain Description: SLATT_5 Location: 6 3976 -6 4513 bp Feature: gene Location: 64569-65843 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 64749-65331 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6 4749-6 5331 bp Feature: gene Location: 65949-66932 bp Feature: domain Description: DUF3187 Location: 65991-66930 bp Feature: domain Description: DUF3187 Location: 6 5991-6 6 930 bp Feature: gene Location: 67092-67280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0M (pfam07070), SLATT_5 (pfam18160), RVT-UG17, DUF3187 (pfam11383)

Seq: MDBK01000141.1 Vibrio splendidus strain 10N.222.49.C7 10N.222.49.C7_contig_70, whole genome shotgun sequence (9056 bp)
Overview 1 RT 1: 1-6874 bp Neighborhood of RT #1 [1, 6874] RVT-GII GIIM PRK08250 QdoI HTH_ARAC RVT_N RVT-GII GIIM Feature: gene Location: 1-1164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100-718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100-7 18 bp Feature: domain Description: GIIM Note: maturase Location: 763-973 bp Feature: domain Description: GIIM Note: maturase Location: 7 63-97 3 bp Feature: gene Location: 1262-1738 bp Feature: gene Location: 2390-3106 bp Feature: domain Description: PRK08250 Location: 2393-3083 bp Feature: domain Description: PRK08250 Location: 2393-3083 bp Feature: gene Location: 3205-3975 bp Feature: domain Description: QdoI Location: 3223-3457 bp Feature: domain Description: QdoI Location: 3223-3457 bp Feature: domain Description: HTH_ARAC Location: 3718-3961 bp Feature: domain Description: HTH_ARAC Location: 37 18-3961 bp Feature: gene Location: 4163-4486 bp Feature: gene Location: 4522-6153 bp Feature: domain Description: RVT_N Location: 4729-4972 bp Feature: domain Description: RVT_N Location: 47 29-497 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5017-5644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5017 -5644 bp Feature: domain Description: GIIM Note: maturase Location: 5704-5929 bp Feature: domain Description: GIIM Note: maturase Location: 57 04-5929 bp Feature: gene Location: 6320-6466 bp Feature: gene Location: 6476-6874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK08250 (glutamine amidotransferase; Provisional), QdoI (COG1917), HTH_ARAC (smart00342), RVT_N (pfam13655)

Seq: MDBK01000165.1 Vibrio splendidus strain 10N.222.49.C7 10N.222.49.C7_contig_92, whole genome shotgun sequence (34535 bp)
Overview 1 RT 1: 31760-34533 bp Neighborhood of RT #1 [31760, 34533] PRK04980 RVT_N RVT-GII GIIM Feature: gene Location: 31760-31912 bp Feature: gene Location: 32018-32329 bp Feature: domain Description: PRK04980 Location: 32024-32324 bp Feature: domain Description: PRK0498 0 Location: 32024-32324 bp Feature: gene Location: 32701-34332 bp Feature: domain Description: RVT_N Location: 32908-33151 bp Feature: domain Description: RVT_N Location: 32908 -33151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33196-33823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33196-338 23 bp Feature: domain Description: GIIM Note: maturase Location: 33883-34108 bp Feature: domain Description: GIIM Note: maturase Location: 338 8 3-34108 bp Feature: gene Location: 34408-34533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04980 (hypothetical protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)