myRT

myRT report for GCA_002875285.1_ASM287528v1

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Seq: MDBF01000052.1 Vibrio breoganii strain 10N.222.51.B10 10N.222.51.B10_contig_144, whole genome shotgun sequence (524 bp)
Overview 1 RT 1: 2-437 bp Neighborhood of RT #1 [2, 439] RVT-GII Feature: gene Location: 2-439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 -437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MDBF01000071.1 Vibrio breoganii strain 10N.222.51.B10 10N.222.51.B10_contig_23, whole genome shotgun sequence (55737 bp)
Overview 1 RT 1: 37520-44163 bp Neighborhood of RT #1 [37520, 44393] Cls Toluene_X Toluene_X RVT-GII GIIM PRK10216 EmrA Feature: gene Location: 37520-39037 bp Feature: domain Description: Cls Location: 37700-39023 bp Feature: domain Description: Cls Location: 37700-3902 3 bp Feature: gene Location: 39092-40330 bp Feature: domain Description: Toluene_X Location: 39212-39683 bp Feature: domain Description: Toluene_X Location: 392 12 -39683 bp Feature: domain Description: Toluene_X Location: 39686-40325 bp Feature: domain Description: Toluene_X Location: 39686-4032 5 bp Feature: gene Location: 40563-41807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40725-41418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4072 5-41418 bp Feature: domain Description: GIIM Note: maturase Location: 41502-41721 bp Feature: domain Description: GIIM Note: maturase Location: 41502 -4172 1 bp Feature: gene Location: 42470-43288 bp Feature: domain Description: PRK10216 Location: 42482-42926 bp Feature: domain Description: PRK102 16 Location: 42 482 -42 92 6 bp Feature: gene Location: 43362-44393 bp Feature: domain Description: EmrA Location: 43452-44163 bp Feature: domain Description: EmrA Location: 43452 -44163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cls (COG1502), Toluene_X (pfam03349), RVT-GII, GIIM (pfam08388), PRK10216 (HTH-type transcriptional regulator YidZ), EmrA (COG1566)

Seq: MDBF01000090.1 Vibrio breoganii strain 10N.222.51.B10 10N.222.51.B10_contig_40, whole genome shotgun sequence (51352 bp)
Overview 1 RT 1: 44648-51150 bp Neighborhood of RT #1 [44648, 51350] AAA_21 RVT-Retrons DUF3800 Feature: gene Location: 44648-44878 bp Feature: gene Location: 44991-47099 bp Feature: domain Description: AAA_21 Location: 45066-46014 bp Feature: domain Description: AAA_21 Location: 45066-46014 bp Feature: gene Location: 47286-48335 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47421-47961 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47421-47961 bp Feature: gene Location: 48391-50100 bp Feature: gene Location: 50157-51350 bp Feature: domain Description: DUF3800 Location: 50280-51150 bp Feature: domain Description: DUF3 800 Location: 50280-51150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-Retrons, DUF3800 (pfam12686)

Seq: MDBF01000119.1 Vibrio breoganii strain 10N.222.51.B10 10N.222.51.B10_contig_67, whole genome shotgun sequence (36928 bp)
Overview 1 RT 1: 31110-36088 bp Neighborhood of RT #1 [31110, 36576] MFS_MdfA_MDR_like MarR RVT-UG8 RVT-UG3 Feature: gene Location: 31110-32306 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 31140-32253 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 3114 0-32253 bp Feature: gene Location: 32404-32895 bp Feature: domain Description: MarR Location: 32506-32881 bp Feature: domain Description: MarR Location: 32506-32881 bp Feature: gene Location: 33364-35313 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 33838-34285 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 33838-34 285 bp Feature: gene Location: 35314-36576 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 35605-36088 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 35605-36088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MdfA_MDR_like (cd17320), MarR (pfam01047), RVT-UG8, RVT-UG3

Seq: MDBF01000135.1 Vibrio breoganii strain 10N.222.51.B10 10N.222.51.B10_contig_81, whole genome shotgun sequence (3576 bp)
Overview 1 RT 1: 283-2691 bp Neighborhood of RT #1 [283, 2747] RVT-GII GIIM DDE_Tnp_1_assoc Feature: gene Location: 283-414 bp Feature: gene Location: 624-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843-1458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843-145 8 bp Feature: domain Description: GIIM Note: maturase Location: 1509-1710 bp Feature: domain Description: GIIM Note: maturase Location: 15 09-1710 bp Feature: gene Location: 1964-2107 bp Feature: gene Location: 2427-2747 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2451-2691 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 245 1-2691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808)