myRT

myRT report for GCA_002875305.1_ASM287530v1

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Seq: MDBE01000034.1 Vibrio splendidus strain 10N.222.51.B4 10N.222.51.B4_contig_39, whole genome shotgun sequence (212476 bp)
Overview 1 RT 1: 121483-127103 bp Neighborhood of RT #1 [121483, 127174] TflA Nudix_Hydrolase_7 RVT_N RVT-GII GIIM Arm-DNA-bind_3 XerC Arm-DNA-bind_3 Phage_int_SAM_3 INT_Rci_Hp1_C Feature: gene Location: 121483-121851 bp Feature: domain Description: TflA Location: 121495-121825 bp Feature: domain Description: TflA Location: 1 21 495-1 21 825 bp Feature: gene Location: 121949-122395 bp Feature: domain Description: Nudix_Hydrolase_7 Location: 121961-122354 bp Feature: domain Description: Nudix_Hydrolase_7 Location: 1 21 961 -1 22354 bp Feature: gene Location: 123075-124553 bp Feature: domain Description: RVT_N Location: 123129-123372 bp Feature: domain Description: RVT_N Location: 1 231 29-1 23372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123417-124044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2341 7-1 24044 bp Feature: domain Description: GIIM Note: maturase Location: 124104-124329 bp Feature: domain Description: GIIM Note: maturase Location: 1 241 04-1 24329 bp Feature: gene Location: 124752-126047 bp Feature: domain Description: Arm-DNA-bind_3 Location: 124770-124962 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 24770-1 24962 bp Feature: domain Description: XerC Location: 125094-125835 bp Feature: domain Description: XerC Location: 1 25094-1 25835 bp Feature: gene Location: 126044-127174 bp Feature: domain Description: Arm-DNA-bind_3 Location: 126062-126260 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 26062-1 26260 bp Feature: domain Description: Phage_int_SAM_3 Location: 126326-126479 bp Feature: domain Description: Phage_int_SAM_3 Location: 1 26326-1 26479 bp Feature: domain Description: INT_Rci_Hp1_C Location: 126629-127103 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 26629-1 271 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TflA (cd16362), Nudix_Hydrolase_7 (cd04664), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Arm-DNA-bind_3 (pfam13356), XerC (COG4973), Phage_int_SAM_3 (pfam14659), INT_Rci_Hp1_C (cd00796)

Seq: MDBE01000057.1 Vibrio splendidus strain 10N.222.51.B4 10N.222.51.B4_contig_6, whole genome shotgun sequence (343873 bp)
Overview 1 RT 1: 207119-211652 bp Neighborhood of RT #1 [207119, 211660] PRK03606 COG3748 RVT-UG2 GrpB Feature: gene Location: 207119-207679 bp Feature: domain Description: PRK03606 Location: 207137-207611 bp Feature: domain Description: PRK03606 Location: 2 07137-2 07611 bp Feature: gene Location: 207694-209013 bp Feature: domain Description: COG3748 Location: 207700-209005 bp Feature: domain Description: COG3748 Location: 2 07700-2 09005 bp Feature: gene Location: 209545-210828 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 209749-210532 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2 09749-2 10532 bp Feature: gene Location: 210931-211170 bp Feature: gene Location: 211187-211660 bp Feature: domain Description: GrpB Location: 211226-211652 bp Feature: domain Description: GrpB Location: 2 112 2 6-2 11652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03606 (ureidoglycolate lyase), COG3748 (Uncharacterized membrane protein ), RVT-UG2, GrpB (pfam04229)