myRT

myRT report for GCA_002875485.1_ASM287548v1

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Seq: MDAR01000036.1 Vibrio sp. 10N.222.54.B6 10N.222.54.B6_contig_13, whole genome shotgun sequence (162918 bp)
Overview 1 RT 1: 2-3446 bp Neighborhood of RT #1 [2, 3493] RVT_N RVT-GII GIIM RND_mfp Feature: gene Location: 2-148 bp Feature: gene Location: 240-383 bp Feature: gene Location: 618-2090 bp Feature: domain Description: RVT_N Location: 666-909 bp Feature: domain Description: RVT_N Location: 666-909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954-1 581 bp Feature: domain Description: GIIM Note: maturase Location: 1641-1866 bp Feature: domain Description: GIIM Note: maturase Location: 1 641 -1 866 bp Feature: gene Location: 2138-2347 bp Feature: gene Location: 2369-3493 bp Feature: domain Description: RND_mfp Location: 2537-3446 bp Feature: domain Description: RND_mfp Location: 2537-3446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RND_mfp (TIGR01730)

Seq: MDAR01000088.1 Vibrio sp. 10N.222.54.B6 10N.222.54.B6_contig_27, whole genome shotgun sequence (19973 bp)
Overview 1 RT 1: 17980-19710 bp Neighborhood of RT #1 [17980, 19937] RVT-GII GIIM Feature: gene Location: 17980-18153 bp Feature: gene Location: 18283-18414 bp Feature: gene Location: 18624-19937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18843-19455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18843-19455 bp Feature: domain Description: GIIM Note: maturase Location: 19509-19710 bp Feature: domain Description: GIIM Note: maturase Location: 19509-19710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MDAR01000104.1 Vibrio sp. 10N.222.54.B6 10N.222.54.B6_contig_41, whole genome shotgun sequence (297 bp)
Overview 1 RT 1: 3-276 bp Neighborhood of RT #1 [3, 275] RVT-GII Feature: gene Location: 3-275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MDAR01000134.1 Vibrio sp. 10N.222.54.B6 10N.222.54.B6_contig_69, whole genome shotgun sequence (43469 bp)
Overview 1 RT 1: 37408-43391 bp Neighborhood of RT #1 [37408, 43447] RVT-UG4 rve_3 Feature: gene Location: 37408-37758 bp Feature: gene Location: 38207-41062 bp Feature: gene Location: 41198-42175 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 41558-42011 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4 1558-4 2011 bp Feature: gene Location: 42450-42950 bp Feature: gene Location: 43268-43447 bp Feature: domain Description: rve_3 Location: 43307-43391 bp Feature: domain Description: rve_3 Location: 4 3307-4 3391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, rve_3 (pfam13683)

Seq: MDAR01000146.1 Vibrio sp. 10N.222.54.B6 10N.222.54.B6_contig_8, whole genome shotgun sequence (1784 bp)
Overview 1 RT 1: 202-1632 bp Neighborhood of RT #1 [202, 1781] RVT-GII GIIM Feature: gene Location: 202-333 bp Feature: gene Location: 543-1781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762-1374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762-1374 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1632 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MDAR01000147.1 Vibrio sp. 10N.222.54.B6 10N.222.54.B6_contig_80, whole genome shotgun sequence (85669 bp)
Overview 1 RT 1: 17867-26906 bp Neighborhood of RT #1 [17867, 26911] RVT-GII ThrE ThrE ThrE PRK10220 Feature: gene Location: 17867-22024 bp Feature: gene Location: 22026-24197 bp Feature: gene Location: 24175-24375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24217-24367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24217-2436 7 bp Feature: gene Location: 25150-26394 bp Feature: domain Description: ThrE Location: 25261-25465 bp Feature: domain Description: ThrE Location: 2526 1-2546 5 bp Feature: domain Description: ThrE Location: 25522-25921 bp Feature: domain Description: ThrE Location: 25522-25921 bp Feature: domain Description: ThrE Location: 25969-26371 bp Feature: domain Description: ThrE Location: 2596 9-26 371 bp Feature: gene Location: 26573-26911 bp Feature: domain Description: PRK10220 Location: 26576-26906 bp Feature: domain Description: PRK10220 Location: 26 576 -26 906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ThrE (pfam06738), PRK10220 (phnA family protein)