myRT

myRT report for GCA_002875495.1_ASM287549v1

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Seq: MDAO01000013.1 Vibrio splendidus strain 10N.222.54.F7 10N.222.54.F7_contig_2, whole genome shotgun sequence (554756 bp)
Overview 1 RT 1: 1253-8140 bp Neighborhood of RT #1 [1253, 8154] DUF3653 RVT-UG8 RVT-UG3 GGDEF Feature: gene Location: 1253-1387 bp Feature: gene Location: 1649-1921 bp Feature: domain Description: DUF3653 Location: 1661-1838 bp Feature: domain Description: DUF3653 Location: 1 661 -1 838 bp Feature: gene Location: 2452-4416 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2959-3409 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2959-3409 bp Feature: gene Location: 4406-5641 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4694-5171 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4694-51 71 bp Feature: gene Location: 6081-6275 bp Feature: gene Location: 6886-8154 bp Feature: domain Description: GGDEF Location: 7687-8140 bp Feature: domain Description: GGDEF Location: 7687-81 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3653 (pfam12375), RVT-UG8, RVT-UG3, GGDEF (TIGR00254)

Seq: MDAO01000015.1 Vibrio splendidus strain 10N.222.54.F7 10N.222.54.F7_contig_21, whole genome shotgun sequence (222505 bp)
Overview 1 RT 1: 209355-220698 bp Neighborhood of RT #1 [209355, 221411] LysR RVT_N RVT-GII GIIM HDGYP HDGYP HDGYP GIIM RVT-GII RVT-GII DDE_Tnp_1_5 AAA_15 Feature: gene Location: 209355-210260 bp Feature: domain Description: LysR Location: 209370-210225 bp Feature: domain Description: LysR Location: 2 09370-2 102 2 5 bp Feature: gene Location: 210462-210635 bp Feature: gene Location: 210647-212278 bp Feature: domain Description: RVT_N Location: 210854-211097 bp Feature: domain Description: RVT_N Location: 2 10854-2 11097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211142-211769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 11142 -2 11769 bp Feature: domain Description: GIIM Note: maturase Location: 211829-212054 bp Feature: domain Description: GIIM Note: maturase Location: 2 1182 9-2 12 054 bp Feature: gene Location: 212875-213039 bp Feature: gene Location: 213251-213535 bp Feature: gene Location: 215459-216850 bp Feature: domain Description: HDGYP Location: 215570-215675 bp Feature: domain Description: HDGYP Location: 2 15570-2 15675 bp Feature: domain Description: HDGYP Location: 215900-216227 bp Feature: domain Description: HDGYP Location: 2 15900-2 162 2 7 bp Feature: domain Description: HDGYP Location: 216251-216842 bp Feature: domain Description: HDGYP Location: 2 162 51-2 16842 bp Feature: gene Location: 217088-217576 bp Feature: domain Description: GIIM Note: maturase Location: 217127-217352 bp Feature: domain Description: GIIM Note: maturase Location: 2 1712 7-2 17352 bp Feature: gene Location: 217566-217835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217578-217827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 17578-2 1782 7 bp Feature: gene Location: 217839-218051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217842-218049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 17842 -2 18049 bp Feature: gene Location: 218240-219160 bp Feature: domain Description: DDE_Tnp_1_5 Location: 218297-218627 bp Feature: domain Description: DDE_Tnp_1_5 Location: 2 182 97-2 1862 7 bp Feature: gene Location: 219396-221411 bp Feature: domain Description: AAA_15 Location: 219402-220698 bp Feature: domain Description: AAA_15 Location: 2 19402 -2 2 0698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HDGYP (COG2206), DDE_Tnp_1_5 (pfam13737), AAA_15 (pfam13175)

Seq: MDAO01000040.1 Vibrio splendidus strain 10N.222.54.F7 10N.222.54.F7_contig_44, whole genome shotgun sequence (1718 bp)
Overview 1 RT 1: 359-1382 bp Neighborhood of RT #1 [359, 1606] RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 359-592 bp Feature: gene Location: 185-1606 bp Feature: domain Description: RVT_N Location: 233-476 bp Feature: domain Description: RVT_N Location: 23 3 -476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521-755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1382 bp Feature: domain Description: GIIM Note: maturase Location: 1157-13 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)