myRT

myRT report for GCA_002875555.1_ASM287555v1

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Seq: MDAK01000128.1 Vibrio sp. 10N.261.45.A1 10N.261.45.A1_contig_38, whole genome shotgun sequence (58110 bp)
Overview 1 RT 1: 25586-30077 bp Neighborhood of RT #1 [25586, 30077] INT_RitA_C_like RVT_N RVT-GII GIIM Feature: gene Location: 25586-26215 bp Feature: domain Description: INT_RitA_C_like Location: 25706-26198 bp Feature: domain Description: INT_RitA_C_like Location: 25706-261 98 bp Feature: gene Location: 26158-26373 bp Feature: gene Location: 26706-28337 bp Feature: RT Description: RVT_N Location: 26913-27156 bp Feature: RT Description: RVT_N Location: 2691 3-271 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27201-27828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27201 -27828 bp Feature: domain Description: GIIM Note: maturase Location: 27888-28113 bp Feature: domain Description: GIIM Note: maturase Location: 27888-281 1 3 bp Feature: gene Location: 28718-29197 bp Feature: gene Location: 29490-30077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDAK01000177.1 Vibrio sp. 10N.261.45.A1 10N.261.45.A1_contig_82, whole genome shotgun sequence (90993 bp)
Overview 1 RT 1: 82-3286 bp Neighborhood of RT #1 [82, 3504] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 82-1098 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 256-847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 56-847 bp Feature: gene Location: 1088-2713 bp Feature: domain Description: COG3950 Location: 1292-2672 bp Feature: domain Description: COG3950 Location: 12 92 -2 672 bp Feature: gene Location: 2719-3504 bp Feature: domain Description: TIGR02646 Location: 2836-3286 bp Feature: domain Description: TIGR02 646 Location: 2 836-32 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), RVT-Retrons

Seq: MDAK01000180.1 Vibrio sp. 10N.261.45.A1 10N.261.45.A1_contig_85, whole genome shotgun sequence (107761 bp)
Overview 1 RT 1: 60709-64463 bp Neighborhood of RT #1 [60709, 64463] SUFU RVT-GII GIIM Feature: gene Location: 60709-60912 bp Feature: gene Location: 61323-61880 bp Feature: domain Description: SUFU Location: 61431-61869 bp Feature: domain Description: SUFU Location: 6143 1-61869 bp Feature: gene Location: 61976-63322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62258-62876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62258-62876 bp Feature: domain Description: GIIM Note: maturase Location: 62921-63131 bp Feature: domain Description: GIIM Note: maturase Location: 62921-63 13 1 bp Feature: gene Location: 63608-63757 bp Feature: gene Location: 63948-64463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUFU (pfam05076), RVT-GII, GIIM (pfam08388)