myRT

myRT report for GCA_002875605.1_ASM287560v1

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Seq: MDAI01000127.1 Vibrio sp. 10N.261.45.A6 10N.261.45.A6_contig_45, whole genome shotgun sequence (49703 bp)
Overview 1 RT 1: 28034-31953 bp Neighborhood of RT #1 [28034, 31953] RVT_N RVT-GII GIIM Feature: gene Location: 28034-28621 bp Feature: gene Location: 28914-29393 bp Feature: gene Location: 29774-31405 bp Feature: RT Description: RVT_N Location: 29981-30224 bp Feature: RT Description: RVT_N Location: 29981 -30224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30269-30896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30269-30896 bp Feature: domain Description: GIIM Note: maturase Location: 30956-31181 bp Feature: domain Description: GIIM Note: maturase Location: 30956-31 1 81 bp Feature: gene Location: 31425-31634 bp Feature: gene Location: 31738-31953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MDAI01000137.1 Vibrio sp. 10N.261.45.A6 10N.261.45.A6_contig_54, whole genome shotgun sequence (86454 bp)
Overview 1 RT 1: 60785-64539 bp Neighborhood of RT #1 [60785, 64539] SUFU RVT-GII GIIM Feature: gene Location: 60785-60988 bp Feature: gene Location: 61399-61956 bp Feature: domain Description: SUFU Location: 61507-61945 bp Feature: domain Description: SUFU Location: 61507-61945 bp Feature: gene Location: 62052-63398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62334-62952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 334-62 952 bp Feature: domain Description: GIIM Note: maturase Location: 62997-63207 bp Feature: domain Description: GIIM Note: maturase Location: 62 997-632 07 bp Feature: gene Location: 63684-63833 bp Feature: gene Location: 64024-64539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUFU (pfam05076), RVT-GII, GIIM (pfam08388)

Seq: MDAI01000139.1 Vibrio sp. 10N.261.45.A6 10N.261.45.A6_contig_56, whole genome shotgun sequence (100781 bp)
Overview 1 RT 1: 9064-13090 bp Neighborhood of RT #1 [9064, 13308] PRK05855 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 9064-9405 bp Feature: domain Description: PRK05855 Location: 9166-9397 bp Feature: domain Description: PRK05855 Location: 9166-93 97 bp Feature: gene Location: 9577-9720 bp Feature: gene Location: 9886-10902 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10060-10651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10060-10651 bp Feature: gene Location: 10892-12517 bp Feature: domain Description: COG3950 Location: 11096-12476 bp Feature: domain Description: COG3 950 Location: 11096-12476 bp Feature: gene Location: 12523-13308 bp Feature: domain Description: TIGR02646 Location: 12640-13090 bp Feature: domain Description: TIGR02646 Location: 12640-13 090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), PRK05855 (SDR family oxidoreductase), RVT-Retrons