myRT

myRT report for GCA_002875715.1_ASM287571v1

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Seq: MDAA01000009.1 Vibrio lentus strain 10N.261.45.E12 10N.261.45.E12_contig_16, whole genome shotgun sequence (62413 bp)
Overview 1 RT 1: 26735-32192 bp Neighborhood of RT #1 [26735, 32203] Big_1 Big_1 DUF1566 RVT-DGRs Avd_like trans_reg_C Feature: gene Location: 26735-29326 bp Feature: domain Description: Big_1 Location: 28316-28445 bp Feature: domain Description: Big_1 Location: 2831 6-28445 bp Feature: domain Description: Big_1 Location: 28553-28736 bp Feature: domain Description: Big_1 Location: 28553-28736 bp Feature: domain Description: DUF1566 Location: 29063-29315 bp Feature: domain Description: DUF1 566 Location: 29063-2931 5 bp Feature: gene Location: 29415-29906 bp Feature: gene Location: 30268-31524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30475-31177 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30475-31 1 77 bp Feature: gene Location: 31504-31878 bp Feature: domain Description: Avd_like Location: 31534-31864 bp Feature: domain Description: Avd_like Location: 31 534-31 864 bp Feature: gene Location: 31910-32203 bp Feature: domain Description: trans_reg_C Location: 31973-32192 bp Feature: domain Description: trans_reg_C Location: 31 973-321 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_1 (pfam02369), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), trans_reg_C (cd00383)

Seq: MDAA01000029.1 Vibrio lentus strain 10N.261.45.E12 10N.261.45.E12_contig_34, whole genome shotgun sequence (11130 bp)
Overview 1 RT 1: 4954-10627 bp Neighborhood of RT #1 [4954, 10627] RVT-UG5 nitrilase Feature: gene Location: 4954-5475 bp Feature: gene Location: 5607-6296 bp Feature: gene Location: 6911-9859 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 7415-7904 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 7415-7904 bp Feature: domain Description: nitrilase Location: 9197-9785 bp Feature: domain Description: nitrilase Location: 9197-9785 bp Feature: gene Location: 9892-10368 bp Feature: gene Location: 10445-10627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424)

Seq: MDAA01000049.1 Vibrio lentus strain 10N.261.45.E12 10N.261.45.E12_contig_7, whole genome shotgun sequence (1060917 bp)
Overview 1 RT 1: 165099-171114 bp Neighborhood of RT #1 [165099, 171158] Csy3_I-F Cas6_I-F RVT_N RVT-GII GIIM MFS_MefA_like Feature: gene Location: 165099-166130 bp Feature: domain Description: Csy3_I-F Location: 165108-166113 bp Feature: domain Description: Csy3 _I-F Location: 165108-166113 bp Feature: gene Location: 166140-166745 bp Feature: domain Description: Cas6_I-F Location: 166152-166737 bp Feature: domain Description: Cas6_I-F Location: 166152-16673 7 bp Feature: gene Location: 167233-168864 bp Feature: domain Description: RVT_N Location: 167440-167683 bp Feature: domain Description: RVT_N Location: 167440-167683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167728-168355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167728-1683 55 bp Feature: domain Description: GIIM Note: maturase Location: 168415-168640 bp Feature: domain Description: GIIM Note: maturase Location: 168415-168640 bp Feature: gene Location: 169318-169449 bp Feature: gene Location: 169977-171158 bp Feature: domain Description: MFS_MefA_like Location: 169992-171114 bp Feature: domain Description: MFS_MefA_like Location: 169992-171114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csy3_I-F (cl09832), Cas6_I-F (cl09835), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173)